BAC Information

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BAC

Clone NameMSMg01-489B05
Chromosome8 (Build37)
Map Location 44,189,442 - 44,189,600
singlet/doubletsinglet
Overlap genenone
Upstream geneEG620772, LOC628212
Downstream geneTriml1, LOC622082, EG622117, LOC100039417, Zfp42, Adam26b, Adam26a, EG384813, Adam34, EG384814, LOC100039472, LOC547011, LOC622263
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-489B05.T7 (MSMg01no489_b05.b1)MSMg01-489B05.TJ (MSMg01no489_b05.g1)
ACCAG567647AG567648
length718683
length of high quality
(start - end)		637 (60 - 696)161 (111 - 271)
definitionCHROMAT_FILE: MSMg01no489_b05.b1 PHD_FILE: MSMg01no489_b05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:12:10 2005CHROMAT_FILE: MSMg01no489_b05.g1 PHD_FILE: MSMg01no489_b05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:12:11 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NTTGCGGGTTNNCCTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXCGCGGAATTCCTGATCTTTCCAACACTTTTATCACTTTTAT
CATGAATGGGTGTTGGATCTTGTCAAATGCTTTTTCTGCATCTAACGAGA
TGATCATGTGGTTTTTGTCTTTGAGTTTGTTTATATAATGGATTACATTG
ATGGATTTTCGTATATTAAACCATCCCTGCATCCCTGGATTAAAACCTAC
TTGGTCTGGATGGATGATTGCTTTAATGTGTTCTTGGATTTGGTTAGCGA
GAATTTTATTGAGGATTTTTGCATCGATATTCATAAGAGAAATTGGTCTG
AAGTTCTCTATCTTTGTTGGGTCTTTCTGTTGTTTAGGTATCAGAGTAAT
AGTGGCTTCATAAAATGAGTTGGGTAGAGTACCTTCTACTTCTATTTTGT
GAAATAGTTTGTGCAGAACTGGAATTAGATCTTCTTTGAAGTTCTGATAG
AACTCTGCACTAAACCCATCTGGTCCTGGGCTTTTTTTTGGCTGGGAGAC
TATTAATAACTGCTTCTATTTTTTAGGGGATATGGGACTGTTTAGATGGT
TAACTTGATCCTGATTTAACTTTGGTACCTGGTATCTGTCCAGAAATTTG
TCCATTTCATCCAGGTTTTCCAGTTTTGTTGAGTATAGCCTTTTGTAGAA
NGATCTGATGGTGTTTTG

CACTCCTTAGGTTGAAAGTTTTTTTANNNNNNCCTATGAXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXACTGATGGTGTTGCCCTGAAGCAAGATCAAAGTTGTCCCC
ATAGAGAGTTACTAAATCTCCTGAGGGGGTAGGTTATTATATTTATCTGA
TTGCTTAACTTGACTGCCTGCCTGCCTGCCTGCCTGCCTGCCTGCCTTCC
CTTCCTTCCTTCCTTCCTTCTTCTTTCCTTCTTCATAAAACATCNTTCCT
NTTTCTTTCTTCCTTTCCTCCTCCTCCTCCTTCCCCCTATTTTTTTTCTA
TCTTCCATTCTTTCTACCNNAAAAACACCTTTCTTTCTTTTTTTTCCTTT
TTTTTTTTTTTTTNTTTTACTTTTTTTCCATCCCATTATTCCATCAATTT
ATATTAAACCTTTNTTTTTATCCTACCCTCTATCAACCGAAAAAANAAAT
TTTAATTTATTTTATTTTTGGGGAAGAATTTTTTTTTTTTTTAATATTAA
AGTAAAAAACCCCCGCGATATATGCTTTTTTTGTTTTTTAGTAGTATTAA
TAGTATAAATTCTTAGGCTATGTGTGGATCCTTCTACACTCCATCNACAT
AATTAACGCTTTTTATTTTTGTATCACACTTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no489_b05.g1 MSMg01no489_b05.g1 CHROMAT_FILE:
MSMg01no489_b05.g1 PHD_FILE: MSMg01no489_b05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:12:11 2005
         (161 letters)



>mm_chr8_44189298_44189858
          Length = 561

 Score =  302 bits (156), Expect = 8e-87
 Identities = 159/160 (99%), Gaps = 1/160 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   actgatggtgttgccctgaagcaagatcaaagttgtccccatagagagttactaaatctc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 actgatggtgttgccctgaagcaagatcaaagttgtccccatagagagttactaaatctc 244

                                                                       
Query: 61  ctgagggggtaggttattatatttatctgattgcttaacttgactgcctgcctgcctgcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 243 ctgagggggtaggttattatatttatctgattgcttaacttgactgcctgcctgcctgcc 184

                                                   
Query: 121 tgcctgcctgcctgccttcccttccttccttccttccttc 160
           |||||||||||||||||| |||||||||||||||||||||
Sbjct: 183 tgcctgcctgcctgcctt-ccttccttccttccttccttc 145


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 161
Length of database: 561
Length adjustment: 8
Effective length of query: 153
Effective length of database: 553
Effective search space:    84609
Effective search space used:    84609
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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