Query= MSMg01no490_p04.b1 MSMg01no490_p04.b1 CHROMAT_FILE:
MSMg01no490_p04.b1 PHD_FILE: MSMg01no490_p04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:14:41 2005
(566 letters)
>mm_chr8_114633900_114634865
Length = 966
Score = 1040 bits (538), Expect = 0.0
Identities = 559/566 (98%)
Strand = Plus / Minus
Query: 1 atagccctacagcttctactccacaagtcataccatgataattgatcaatggccacatga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 671 atagccctacagcttctactccacaagtcataccatgataattgatcaatggccacatga 612
Query: 61 taaggagaaatacaggtatggttaggtaggggaattatgtctctcatttgcagagcacct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 611 taaggagaaatacaggtatggttaggtaggggaattatgtctctcatttgcagagcacct 552
Query: 121 cctcatacttcagggataacctgtctatctctgagaaaaggatccctagtacttgtgagg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 cctcatacttcagggataacctgtctatctctgagaaaaggatccctagtacttgtgagg 492
Query: 181 cttcttgtgtttggttgtttggttagtctgacagtactaaggactgaacctagggtctga 240
|||||||| |||||||| |||||||||||||||||||||||||||||||||||| ||||
Sbjct: 491 cttcttgtctttggttggctggttagtctgacagtactaaggactgaacctagggcctga 432
Query: 241 cattgagcttatccccagccctggtttatagttttctcagttctaaacatgcacactgtg 300
||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct: 431 cattgagcttatccccagccctggtttatagttttctcagttctaaacatggagactgtg 372
Query: 301 tgactcagtccctctacctttctctatgaagggacacaggagaacagagctgatggttgg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 tgactcagtccctctacctttctctatgaagggacacaggagaacagagctgatggttgg 312
Query: 361 ggaaaagagagagatttccttcaatggtataaccaacaactgcatgtccatgctcccaat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 ggaaaagagagagatttccttcaatggtataaccaacaactgcatgtccatgctcccaat 252
Query: 421 aagccatcctatctagagtcctattagcaaccctaatcaaactcattagatgggccagtg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 aagccatcctatctagagtcctattagcaaccctaatcaaactcattagatgggccagtg 192
Query: 481 agatggctcagctcataagagtgctcactgccaagctcaacaacctgaattcaattcctg 540
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 191 agatagctcagctcataagagtgctcactgccaagctcaacaacctgaattcaattcctg 132
Query: 541 ggacccacattgtggaaaagagaacc 566
||||||||||||||||||||||||||
Sbjct: 131 ggacccacattgtggaaaagagaacc 106
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 566
Length of database: 966
Length adjustment: 10
Effective length of query: 556
Effective length of database: 956
Effective search space: 531536
Effective search space used: 531536
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no490_p04.g1 MSMg01no490_p04.g1 CHROMAT_FILE:
MSMg01no490_p04.g1 PHD_FILE: MSMg01no490_p04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:14:41 2005
(395 letters)
>mm_chr8_114468895_114469690
Length = 796
Score = 700 bits (362), Expect = 0.0
Identities = 381/388 (98%), Gaps = 3/388 (0%)
Strand = Plus / Plus
Query: 2 aagcttcagacaagccaataaatacttggcctgaggggataggaaagccagagcctgaag 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 aagcttcagacaagccaataaatacttggcctgaggggataggaaagccagagcctgaag 261
Query: 62 actcagagcctgagccactgggtgctacctttctgtgccacctatagctctggaggtctt 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 actcagagcctgagccactgggtgctacctttctgtgccacctatagctctggaggtctt 321
Query: 122 gtcatccctctgtctctctcagccttcattcagaggctctcgggcactgtgttgatggct 181
|||||||||||| ||||||||||||||||||||||||||| ||||||| |||||||||||
Sbjct: 322 gtcatccctctgcctctctcagccttcattcagaggctcttgggcactttgttgatggct 381
Query: 182 gtgcactttattt-accaggaggaagctggggcatctgtggggccactctgctcccctta 240
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 gtgcactttattttaccaggaggaagctggggcatctgtggggccactctgctcccctta 441
Query: 241 aggtagaaggaagtaaatccttgatggattccagaccttgcacggcaccttggtgatcct 300
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 442 aggtagaaggaagtaaatccttgatggattccagaccttgcatggcaccttggtgatcct 501
Query: 301 gctttcctacctctggagaggaagtaggacacgagcagcagtggcactggtttagtgtcc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 gctttcctacctctggagaggaagtaggacacgagcagcagtggcactggtttagtgtcc 561
Query: 361 ttagtgcctgtcctctggcac--agtgg 386
||||||||||||||||||||| |||||
Sbjct: 562 ttagtgcctgtcctctggcactaagtgg 589
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 395
Length of database: 796
Length adjustment: 9
Effective length of query: 386
Effective length of database: 787
Effective search space: 303782
Effective search space used: 303782
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
