Query= MSMg01no491_a03.b1 MSMg01no491_a03.b1 CHROMAT_FILE:
MSMg01no491_a03.b1 PHD_FILE: MSMg01no491_a03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:14:46 2005
(562 letters)
>mm_chr8_46091732_46092693
Length = 962
Score = 1050 bits (543), Expect = 0.0
Identities = 555/559 (99%), Gaps = 1/559 (0%)
Strand = Plus / Plus
Query: 4 ggaattcactttagcgtaccatccagatacattttaacaattttggcagtcttctagctc 63
|||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcactttagcgaagcatccagatacattttaacaattttggcagtcttctagctc 263
Query: 64 atggcatatattgatgattcaagagatattaagattaaagtcctagagacaggttgacat 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 atggcatatattgatgattcaagagatattaagattaaagtcctagagacaggttgacat 323
Query: 124 tttattctagtttgataatataatcaaagaaatggggaatacagggtgggcatcattttc 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tttattctagtttgataatataatcaaagaaatggggaatacagggtgggcatcattttc 383
Query: 184 ttattctcttattataaattggctgactgttgttgaagtaataacaacagtcagccaatt 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ttattctcttattataaattggctgactgttgttgaagtaataacaacagtcagccaatt 443
Query: 244 tataataaggaataaaaaatattttattatctttttaatatcaattctttatttgaagat 303
||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 444 tataataaggaat-aaaaatattttattatctttttaatagcaattctttatttgaagat 502
Query: 304 agatgactagaagatagtaagttataggtttctaatggttccttttcagtatggttctag 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 agatgactagaagatagtaagttataggtttctaatggttccttttcagtatggttctag 562
Query: 364 aactgaattcaccatttatttatcttaactctggagcaggtattagagatacaggaagag 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 aactgaattcaccatttatttatcttaactctggagcaggtattagagatacaggaagag 622
Query: 424 aataagtcctggataacttcattttacctttaaaattctattctgaccgaatgtctgatg 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 aataagtcctggataacttcattttacctttaaaattctattctgaccgaatgtctgatg 682
Query: 484 accaggagatgtagtagatttgagttcttccctttccataaaagttctgccctttgcccg 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 accaggagatgtagtagatttgagttcttccctttccataaaagttctgccctttgcccg 742
Query: 544 gtgttcccaagaatcgtta 562
|||||||||||||||||||
Sbjct: 743 gtgttcccaagaatcgtta 761
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 562
Length of database: 962
Length adjustment: 10
Effective length of query: 552
Effective length of database: 952
Effective search space: 525504
Effective search space used: 525504
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no491_a03.g1 MSMg01no491_a03.g1 CHROMAT_FILE:
MSMg01no491_a03.g1 PHD_FILE: MSMg01no491_a03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:14:46 2005
(615 letters)
>mm_chr8_46241933_46242947
Length = 1015
Score = 1065 bits (551), Expect = 0.0
Identities = 598/619 (96%), Gaps = 11/619 (1%)
Strand = Plus / Minus
Query: 1 agtcccaaaccatggatttattcaaataaaaatacactaatgaatacaccaaagtgtcaa 60
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 691 agtcccaaaacatggatttattcaaataaaaatacactaatgaatacaccaaagtgtcaa 632
Query: 61 ttatatgtatttggtctcaaatactttcttgtaggatatttatccaattttgaaagtcat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 631 ttatatgtatttggtctcaaatactttcttgtaggatatttatccaattttgaaagtcat 572
Query: 121 taatcaattgagcagatgcacaggtctaggaaccagatagaaagaggctatctccataga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 571 taatcaattgagcagatgcacaggtctaggaaccagatagaaagaggctatctccataga 512
Query: 181 gactgtatcccagaaaacttcacgaagacacatcaaaacccttagaaaccataacaaagt 240
||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct: 511 gactgtatcccagaaaactccacgaagacacatccaaacccttagaaaccataacaaagt 452
Query: 241 actatatagtcttccaaattatggacgccatgaaacccaaggaaagagaggaatcacttc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 actatatagtcttccaaattatggacgccatgaaacccaaggaaagagaggaatcacttc 392
Query: 301 aaaccccaaagcactaaagagagacaggagtgtcaactggagtgtctttaatgccaacaa 360
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 391 aaaccccaaagcactaaagagagacaggagtgtcaagtggagtgtctttaatgccaacaa 332
Query: 361 aggatactaaaatagcaattgaagtggagttgagcctgagaagcaggtgttactgatgtt 420
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 aggatactaagatagcaattgaagtggagttgagcctgagaagcaggtgttactgatgtt 272
Query: 421 ttagtgctggttctctaatgtagatgctgccaagtgtcacatttacccacaggaatgtcc 480
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 271 ttagtgctggttctctaatgtagatgctgccgagtgtcacatttacccacaggaatgtcc 212
Query: 481 ttatctctagg----ttgtgcagtgtcacttcagtgttggggttggtagcagctgtactg 536
|| |||||||| | || ||||||||||||||||||||||||||||||||||
Sbjct: 211 ttgtctctaggaaact----caa---cacttcagtgttggggttggtagcagctgtactg 159
Query: 537 cactttgtaggaattctgtgaatttctgattgttcttaaaaatgaaagttgccttttaac 596
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 158 cactttgtaggaattctgtgaatttctgattattcttaaaaatgaaagttgccttttaac 99
Query: 597 atagtttttaattgagttg 615
|||||||||| ||||||||
Sbjct: 98 atagtttttagttgagttg 80
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 615
Length of database: 1015
Length adjustment: 10
Effective length of query: 605
Effective length of database: 1005
Effective search space: 608025
Effective search space used: 608025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
