BAC Information

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BAC

Clone NameMSMg01-491D10
Chromosome8 (Build37)
Map Location 23,513,150 - 23,513,770
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041843, LOC100040678, EG665927, LOC100040693, Defcr20, LOC100041890, LOC100041895, EG626682, LOC100040706, EG665956, LOC635093, Defcr26, Defcr17, LOC100041952, Defcr-ps1, AY761184, LOC100040729, Defcr24, LOC100040739, Defb1, Defb50, Defb2, Defb10, Defb9, Defb11, Defb15, Defb35, Defb13, C86695, Ccdc70, Atp7b, Alg11, Nek5, Nek3, Ckap2, Vps36, Rpl30-ps2, Thsd1, Tpte, Slc25a15
Downstream geneLOC547006, Mrps31, AI316807, Slc20a2, LOC100040803, Vdac3, Dkk4, Polb, Ikbkb, Plat, Ap3m2, Myst3, LOC100042253, Ank1, Nkx6-3, Agpat6, Gins4, Golga7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-491D10.T7 (MSMg01no491_d10.b1)MSMg01-491D10.TJ (MSMg01no491_d10.g1)
ACCAG569261AG569262
length7431,332
length of high quality
(start - end)
637 (63 - 699)---
definitionCHROMAT_FILE: MSMg01no491_d10.b1 PHD_FILE: MSMg01no491_d10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:15:03 2005CHROMAT_FILE: MSMg01no491_d10.g1 PHD_FILE: MSMg01no491_d10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:15:03 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GCGCTAAACGACNCACATAGGTCGACAATCCGCGGAANCCAAGGAGCCTT
GCTATAAACGGCCAGATCCCCCATGTTTACCAAGTCACTGAAAAGACCTT
TGGCTGTGGGAGTCACTCCTACCAGGACTTTCTAATACTATTCCACGTGG
TGATGAAGTTGCAGAGGCTGCAGTTGAACTGACTCATTGTCTGTAGACAC
TTTCTGGAAAGTTGGTGTGTCTCCTGTGAGTGTGATAGCTATGTCATCCT
GAGTCCTGCCTGGGTCACAGAACCATTTGACAACCAGGGTTCTGAACTGT
ATAATAGTATTATGAGGAAAACTAGCTGAACAATAATTAGAAACAAGCAG
ACTTCTTGGATACATTTGCCTTTCCGTTCTGTTGACCACAGATGTAGTGT
GACCATCTGTCTCATTCCCCTGCCTCTGTGACTTCCCCACAAAATAGACT
GTAGCCTGACATTATAAGCCAAATAAACCCCTTTCTCCCTTAAGTTGCCA
TTGTGCACAGTATTTGTCTTAGTTTCATTCTGTTATTGTGATAAGATGAT
GTCAGCTTAGAGGGCTCATTATCATAGATCAGCAGATCTATGATAGATCA
CAGATCATATCATAGTTCAGGCTCTGTTCTTTGGAGGTCTGTGGTGATGG
TCATCATGGTGGGCTGGGTTGTAGAATGCAGCTTCTCACCTCATGGTGGC
CTGAGAGCAACACTCCATTAAGATCAAGCCCCAGTGGCCTGCA
TGAGAGAGAATAGAGTAAGGGTCGGTTTTCTCCTTGTTCTCTCTCGNGCT
GTGTTCTGGCTGTTGGTTTATTCGTCTTTCCCGTGTAATGAAAAGATGGA
TGACCTATTATGTGTGTGTGACGTGATGTGTATGATGTAATGTGTGTATG
TGTACGTGTTTGATGTGGATGATCTGATGTGGAGGTATATAGGTGTACGT
GTCGTAGTAGATCGTATCGGTAGTTGCTGATGAGTCCGACAAGGAACGTA
ACTCAGGACGATGTCGTGCGTGCACTGACGACACTACAGTGTACCATATC
NACTCCTTCTCATGCGACTTAGGCTCCGCGATGTGCGCTGTCGCACGCAG
TGTCGGTCGATGTGCCATGTATTCTCANTCTTCGTACACCTGCCGTCTCC
ACACGTCCCACTGCGACTATCTTCTGAGCGNATCGCGCCGGGTAACAGTG
ACATTGTTGCGGCGTAGATAGAGCACGCCGTATACCACTAGTACCGCAGA
TTGCGACTATATTATCGTGCTGTGTGTGTGTTGTGTGTAGGGAGTGATTC
GTGTTAATGATATATCTCGGTCCATATATTGTCTTGCTTCTATTCTCGTC
TAACATTTGTACTCTCTCTACTTATACTCGCCTATCCTCTCTATACTCCT
ACACTTCCCTAGTCAATTCCATACTATCCTACTATATCATATCATACTAA
CAAGCGCGAGCGCATACAAACATCGTTATACAGTAGCCGATGCTAGAATG
ATATGACTTTACATACTCGATGAGCGAAGCAGACAACTCAAGCAGCTACC
ACAACCGCCACTACCTCACCATCATCCGAATACGATCGGCTGTATGCTCG
ATACCATCTATACCAGCTAGCGACTCCTATTACTAGATCAACCGATATGA
TATATATATGATATGATGGCGCGACGTATTGATACGCGTTATGCTCGGTA
CTAGAAATATCTATTCGCAACATCCGACAATAGAAGAGTCTAACAGACGC
ATGTGCTGNTCTCGTCATTAGTCCTGTGCATAATACACTGGACAATGCCG
TGCACAATCTACATGAACTAACACCATCGACTCNTCAAGATCTACTCACA
CTCTCTATCCCTGCCTGATCTACTTATCTTATATCATATGTACTATCATA
TTCACCACTCATATCAACACGCACAAAGACAGTAGCATAACCGTACGCCG
CTNGATGATAGAGTGTAATTTAACCATATCTAACGCTAGTGTTAACCCAG
CTATACATATGTGGATACGACGTACAAGACTCATTACATTACATCAGACA
TACACTACAAATATGCCGCATGCACAGTTATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no491_d10.b1 MSMg01no491_d10.b1 CHROMAT_FILE:
MSMg01no491_d10.b1 PHD_FILE: MSMg01no491_d10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:15:03 2005
         (637 letters)



>mm_chr8_23512950_23513986
          Length = 1037

 Score = 1079 bits (558), Expect = 0.0
 Identities = 610/636 (95%), Gaps = 15/636 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   cagatcccccatgtttaccaagtcactgaaaagacctttggctgtgggagtcactcctac 60
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 201 cagatcccccatgtttaccaagtcactgaaaagacctttggcagtgggagtcactcctac 260

                                                                       
Query: 61  caggactttctaatactattccacgtggtgatgaagttgcagaggctgcagttgaactga 120
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caggacttcctaatactattccacgtggtgatgaagttgcagaggctgcagttgaactga 320

                                                                       
Query: 121 ctcattgtctgtagacactttctggaaagttggtgtgtctcctgtgagtgtgatagctat 180
           ||||             |||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 321 ctca-------------ctttctggaaagttggtgtgtctcctgtgagtgtgatagcaat 367

                                                                       
Query: 181 gtcatcctgagtcctgcctgggtcacagaaccatttgacaaccagggttctgaactgtat 240
           ||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 gtggtcctgagtcctgcctgggtcacagaaccatttgacaaccagggttctgaactgtat 427

                                                                       
Query: 241 aatagtattatgaggaaaactagctgaacaataattagaaacaagcagacttcttggata 300
           |||||||  | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 aatagtaagaggaggaaaactagctgaacaataattagaaacaagcagacttcttggata 487

                                                                       
Query: 301 catttgcctttccgttctgttgaccacagatgtagtgtgaccatctgtctcattcccctg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 488 catttgcctttccgttctgttgaccacagatgtagtgtgaccatctgtctcattctcctg 547

                                                                       
Query: 361 cctctgtgacttccccacaaaatagactgtagcctgacattataagccaaataaacccct 420
           ||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||
Sbjct: 548 cctctgtgacttccccacaaaatagact--agcctgacattataagccaaataaacccct 605

                                                                       
Query: 421 ttctcccttaagttgccattgtgcacagtatttgtcttagtttcattctgttattgtgat 480
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 ttctcccttaagttgccgttgtgcacagtatttgtcttagtttcattctgttattgtgat 665

                                                                       
Query: 481 aagatgatgtcagcttagagggctcattatcatagatcagcagatctatgatagatcaca 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 aagatgatgtcagcttagagggctcattatcatagatcagcagatctatgatagatcaca 725

                                                                       
Query: 541 gatcatatcatagttcaggctctgttctttggaggtctgtggtgatggtcatcatggtgg 600
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 726 gatcatatcatagttcaggctcagttctttggaggtctgtggtgatggtcatcatggtgg 785

                                               
Query: 601 gctgggttgtagaatgcagcttctcacctcatggtg 636
           ||||||||||||||||||||||||||||||||||||
Sbjct: 786 gctgggttgtagaatgcagcttctcacctcatggtg 821


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 637
Length of database: 1037
Length adjustment: 10
Effective length of query: 627
Effective length of database: 1027
Effective search space:   643929
Effective search space used:   643929
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)