BAC Information

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BAC

Clone NameMSMg01-491N08
Chromosome8 (Build37)
Map Location 87,256,602 - 87,405,850
singlet/doubletdoublet
Overlap geneNfix, Dand5, Gadd45gip1, Rad23a, Calr, LOC546080, Farsa, Syce2
Upstream geneCd97, EG384857, Lphn1, Asf1b, Prkaca, Samd1, 1700067K01Rik, 2210011C24Rik, 4432412L15Rik, Il27ra, Rln3, C330011M18Rik, Rfx1, BC057552, LOC100039920, Podnl1, Cc2d1a, 4930432K21Rik, Nanos3, Zswim4, D8Ertd738e, 2410018C20Rik, Ccdc130, Cacna1a, Ier2, LOC100039975, Btbd14b, Trmt1, LOC100039997, Lyl1
Downstream geneGcdh, Klf1, Dnase2a, Mast1, Rtbdn, Rnaseh2a, LOC666841, Prdx2, Junb, Hook2, Best2, Asna1, 2310036O22Rik, Tnpo2, Fbxw9, EG436049, Dhps, 1500041N16Rik, BC056474, Man2b1, EG244556, EG624855, Olfr371, Vps35, Orc6l, D830007F02Rik, 4921524J17Rik, Gpt2, Dnaja2, Neto2, Itfg1, LOC100040798, Phkb
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-491N08.T7 (MSMg01no491_n08.b1)MSMg01-491N08.TJ (MSMg01no491_n08.g1)
ACCAG569735AG569736
length748752
length of high quality
(start - end)
524 (33 - 556)275 (113 - 387)
definitionCHROMAT_FILE: MSMg01no491_n08.b1 PHD_FILE: MSMg01no491_n08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:15:51 2005CHROMAT_FILE: MSMg01no491_n08.g1 PHD_FILE: MSMg01no491_n08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:15:51 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(87,405,412 - 87,405,850)(87,256,602 - 87,256,876)
sequence
GCCGCTATACGACTCACTATATTTCCAGGATCCGCGGAATTCAGATGCTG
TTTACAGCAAAATGCCTGCCTGCCCTCTGCCATTTATAACTCCTGTGGAT
ATACACTACCGTGTGCTTGTCACGTGTGATCAGAAGCATCAAAGGAGTGT
GCCCTTGTTGCCCCTGTACTCCAACATGAGGTTGTCCCTAGCCCATTTTT
TTGTTGTTGGTTTTGAAACAGTACCTCATTCTTTAGCCCAGGCCGTTTTT
TAAACTTAAGGCAATACTCCTGACTCAACCTTTCAAGTGCTGGGATTACA
GACAAAAGCCACTATGCATTAGCTCCACTGTCAGTTGAATGAAGAATACA
ATGCTGATCTGTTATCCCACCTCCAGCTCCATACAAGTTCATTTTCCTCC
AATACATTTACCATATTAGGACTGCTTTAGAAAGGCAGAAATTCTACAGC
GAGGCCAGCTATAGAAAGCATGGGAACTAGGAGGCCAACCCCTGAACATT
TCTATAAAATGGCTTTTGGGGTGGAATGGATTTACAAAGGGTCTTTGACC
TCTGAGGCTGAAGTCAGTCATCTTTCCAAGTCTGACTGAGGTGGAGTTTC
ACTCAGATGCTCTTGTGTCTTAGATGCCTTAGGACAGCCATGCTCTCCTT
GCATGTGCCTAGAGCTGGTGAACATGCTCAAGATGCCTGGGTCTTAACTC
CCCTGTACTTTGCCTCCAACTGTGATACTGCTTTCAAAGCTTGCTGGT
GGTCTGGAGGNCGCNGGCCGTCANCATTTAGCGGANANNANAGAAGGACT
GACAGAAAAAGGGGGCACNACAGCCAGCACTCCACGGCTCCCACGCGAAA
CAATCTTTCTCTGCAAGGGGCAGCTGCTTGTAGCTCGCTGGCCAGCTGTC
TCCATGGACTTCACCCAACATATTCTTTAGGGGCCAGGAGGGGTGCACAG
ATCAGCCTCTGCTGTCCTCCAAAAACATACCTAGACATGTGGATACTCTC
AGATGAACACACTTGTGATCCCCTCAGCCACATGTGCCACCTGCAGATGC
CACCAGCCTTTTTTTTGTGACAAGACAAGGCAGGGNATGATGGAACAGCC
ATATAAAGGGGCACTTCAACTATGGCAAACGGCTGGTCCAGAAGCAGGCA
GTGGTGTGATTCCAGTTCCCATTCCCGCCCTCCCTAGGGCTGCATCTCAT
CTGCCTGCCTCTCCCCCCTCCTCTGTGATTCCGGAGTGTCCAGTGCACAG
GAAACCCAATCTCAAGGAGAGCCAGAGGCCCCGCCTGCAGCAATCATAGC
TGCAGAATGTGACTATTGTACCTCCTGAAACCCAAGTCAGAGAATCTGAG
ACACCCTGAAGAGGGGGCCGCAATGGATGGGTGGCTGGGAGAAAGGTCAC
AAAGGGGTTCTCCCTGTCTCAACAAACAGGACACTGGAGGAACTGGACTG
AAGAAATCCTTGAGAACGCCAGGCAGCCAAAGGGCATAAGGAAGCGGGGC
TG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no491_n08.b1 MSMg01no491_n08.b1 CHROMAT_FILE:
MSMg01no491_n08.b1 PHD_FILE: MSMg01no491_n08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:15:51 2005
         (524 letters)



>mm_chr8_87404927_87405850
          Length = 924

 Score =  849 bits (439), Expect = 0.0
 Identities = 439/439 (100%)
 Strand = Plus / Minus

                                                                       
Query: 86  tgtcacgtgtgatcagaagcatcaaaggagtgtgcccttgttgcccctgtactccaacat 145
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 924 tgtcacgtgtgatcagaagcatcaaaggagtgtgcccttgttgcccctgtactccaacat 865

                                                                       
Query: 146 gaggttgtccctagcccatttttttgttgttggttttgaaacagtacctcattctttagc 205
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 864 gaggttgtccctagcccatttttttgttgttggttttgaaacagtacctcattctttagc 805

                                                                       
Query: 206 ccaggccgttttttaaacttaaggcaatactcctgactcaacctttcaagtgctgggatt 265
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 ccaggccgttttttaaacttaaggcaatactcctgactcaacctttcaagtgctgggatt 745

                                                                       
Query: 266 acagacaaaagccactatgcattagctccactgtcagttgaatgaagaatacaatgctga 325
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 acagacaaaagccactatgcattagctccactgtcagttgaatgaagaatacaatgctga 685

                                                                       
Query: 326 tctgttatcccacctccagctccatacaagttcattttcctccaatacatttaccatatt 385
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 tctgttatcccacctccagctccatacaagttcattttcctccaatacatttaccatatt 625

                                                                       
Query: 386 aggactgctttagaaaggcagaaattctacagcgaggccagctatagaaagcatgggaac 445
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 aggactgctttagaaaggcagaaattctacagcgaggccagctatagaaagcatgggaac 565

                                                                       
Query: 446 taggaggccaacccctgaacatttctataaaatggcttttggggtggaatggatttacaa 505
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 taggaggccaacccctgaacatttctataaaatggcttttggggtggaatggatttacaa 505

                              
Query: 506 agggtctttgacctctgag 524
           |||||||||||||||||||
Sbjct: 504 agggtctttgacctctgag 486


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 524
Length of database: 924
Length adjustment: 10
Effective length of query: 514
Effective length of database: 914
Effective search space:   469796
Effective search space used:   469796
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no491_n08.g1 MSMg01no491_n08.g1 CHROMAT_FILE:
MSMg01no491_n08.g1 PHD_FILE: MSMg01no491_n08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:15:51 2005
         (275 letters)



>mm_chr8_87256402_87257076
          Length = 675

 Score =  472 bits (244), Expect = e-137
 Identities = 267/275 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   gcaaggggcagctgcttgtagctcgctggccagctgtctccatggacttcacccaacata 60
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 201 gcaaggggcagctgcttgtagctcgctggccagctgcctccatggacttcacccaacata 260

                                                                       
Query: 61  ttctttaggggccaggaggggtgcacagatcagcctctgctgtcctccaaaaacatacct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttctttaggggccaggaggggtgcacagatcagcctctgctgtcctccaaaaacatacct 320

                                                                       
Query: 121 agacatgtggatactctcagatgaacacacttgtgatcccctcagccacatgtgccacct 180
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agacatgtggatacactcagatgaacacacttgtgatcccctcagccacatgtgccacct 380

                                                                       
Query: 181 gcagatgccaccagccttttttttgtgacaagacaaggcagggnatgatggaacagccat 240
           ||||||||||||||||  || || ||||||||||||||||||| ||||||||||||||||
Sbjct: 381 gcagatgccaccagccccttcttagtgacaagacaaggcagggtatgatggaacagccat 440

                                              
Query: 241 ataaaggggcacttcaactatggcaaacggctggt 275
           | |||||||||||||||||||||||||||||||||
Sbjct: 441 agaaaggggcacttcaactatggcaaacggctggt 475


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 275
Length of database: 675
Length adjustment: 9
Effective length of query: 266
Effective length of database: 666
Effective search space:   177156
Effective search space used:   177156
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)