Query= MSMg01no491_p11.b1 MSMg01no491_p11.b1 CHROMAT_FILE:
MSMg01no491_p11.b1 PHD_FILE: MSMg01no491_p11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:16:03 2005
(595 letters)
>mm_chr8_70231979_70232973
Length = 995
Score = 841 bits (435), Expect = 0.0
Identities = 450/455 (98%), Gaps = 1/455 (0%)
Strand = Plus / Minus
Query: 141 aaaactttttttttttaacaaatggctggaatgtgggtgtgactttggaattgggcaatg 200
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 995 aaaac-ttttttttttaacaaatggctggaatgtgggtgtgactttggaattgggcaatg 937
Query: 201 ggtagccaatgacagttctgagataaatgcagggaaggcccaattgtcaggattgatgca 260
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||
Sbjct: 936 ggtagccaatgacagttctgagataaatgcagggaaggcccaattgtcaggagtgaagca 877
Query: 261 taaaaataattctgttaagggctctgagaaaggaagctaactaaggtgtgcctcgtgttt 320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 876 taaaaataattctgttaagggctctgagaaaggaagctaactaaggtgtgcctcgtgttt 817
Query: 321 cccagagagtacttcagtagtacttggcataacatagacactcaagaagcacaaagtctc 380
|||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct: 816 cccagagagtacttcagtagtacttggcataacagagacagtcaagaagcacaaagtctc 757
Query: 381 agaaatgataattagtactagacaaggagtcaaagccatgcttggtaaataggtgcaaag 440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 756 agaaatgataattagtactagacaaggagtcaaagccatgcttggtaaataggtgcaaag 697
Query: 441 cagagttgtctgtagcctaggccattcgaaaaggctgattcaaaattgataaattctaat 500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 696 cagagttgtctgtagcctaggccattcgaaaaggctgattcaaaattgataaattctaat 637
Query: 501 aatagaagaagttagtaagcaaaatattgaggaagtggcttggcaacctttaatcacata 560
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 636 aatagaagaagttagtaagcaaaatattgaggaagtggcttggcaacctttaatcacata 577
Query: 561 tagtaagatgaaagaggaccaaaattaaagacaga 595
|||||||||||||||||||||||||||||||||||
Sbjct: 576 tagtaagatgaaagaggaccaaaattaaagacaga 542
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 595
Length of database: 995
Length adjustment: 10
Effective length of query: 585
Effective length of database: 985
Effective search space: 576225
Effective search space used: 576225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no491_p11.g1 MSMg01no491_p11.g1 CHROMAT_FILE:
MSMg01no491_p11.g1 PHD_FILE: MSMg01no491_p11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:16:03 2005
(596 letters)
>mm_chr8_70093329_70094324
Length = 996
Score = 1085 bits (561), Expect = 0.0
Identities = 589/601 (98%), Gaps = 5/601 (0%)
Strand = Plus / Plus
Query: 1 atcttaaact-----tgctagttttcaagactttcttccatgaaattaaaaaatgctatt 55
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 196 atcttaaactaaaaatgctagttttcaagactttcttccatgaaattaaaaaatgctatt 255
Query: 56 gtctggctcattttccatcacaacccatttttaggagactttagcaaaaacatcagggct 115
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 gtctggctcattttccatcacaacccatttttaggagactttagcaaaaacatcagggct 315
Query: 116 tctggagagggatcattaaagattctggggcataggagaggtcatactccagagagctta 175
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 tctggagagggatcattaaagattctggggcataggagaggtcatactccagagagctta 375
Query: 176 aacatgagtcttaattcagaaaatattttacatttgtttccatctagcataaaaatcctt 235
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 376 aacatgagtcttaattcagaaaatattttacatttgtttctatctagcataaaaatcctt 435
Query: 236 ctacaaacattgtttttttcagctaccacctgccctaaagggacagctttaaagagtcaa 295
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 ctacaaacattgaagttttcagctaccacctgccctaaagggacagctttaaagagtcaa 495
Query: 296 aagaataatgggccatgctgcattttaatggactttaactaaaacaaagcttaagggatc 355
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 496 aagaataatgggccatgctgcattttaatggattttaactaaaacaaagcttaagggatc 555
Query: 356 cattaaaaggattcttatggggctgcatggatggcttagtagttgaaagttctgactgtc 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 cattaaaaggattcttatggggctgcatggatggcttagtagttgaaagttctgactgtc 615
Query: 416 tttgcagaggacctgagtttaagttccagcacccacatggctttgtaaccccagttccat 475
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 616 tttgcagaggacctgagtttaagttctagcacccacatggctttgtaaccccagttccat 675
Query: 476 gagctctgactcttggcatcagttgacatcaagcatatttgtgccatgtagatatacatg 535
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 gagctctgactcctggcatcagttgacatcaagcatatttgtgccatgtagatatacatg 735
Query: 536 taggaaaacactcatacacataaaacaaaatttaaaaaataattctcaagtggaagcaat 595
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 736 taggaaaacactcatacacataaaacaaaatttaaaaaataattctcaagtggaagcaat 795
Query: 596 t 596
|
Sbjct: 796 t 796
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 596
Length of database: 996
Length adjustment: 10
Effective length of query: 586
Effective length of database: 986
Effective search space: 577796
Effective search space used: 577796
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
