BAC Information

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BAC

Clone NameMSMg01-493D12
Chromosome8 (Build37)
Map Location 125,038,372 - 125,038,986
singlet/doubletsinglet
Overlap genenone
Upstream gene1700018B08Rik, Fbxo31, Map1lc3b, Zcchc14, Jph3, Klhdc4, Slc7a5, BC048644, Car5a, Banp, Gm22, Zfpm1, Trhr2, 5830416A07Rik, Il17c, Cyba, Mvd, Snai3, Rnf166, 2310061F22Rik
Downstream geneCdt1, Aprt, Galns, Trappc2l, Pabpnl1, Cbfa2t3h, C230057M02Rik, A530010L16Rik, BC021611, LOC100043225, Cdh15, Ankrd11, Spg7, Rpl13, Cpne7, Sult5a1, LOC100043251, Dpep1, Chmp1a, 4732415M23Rik, Cdk10, Spata2L, 1300018I17Rik, Zfp276, Fanca, Spire2, Tcf25, Mc1r, Tubb3, Def8, Afg3l1, Dbndd1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-493D12.T7 (MSMg01no493_d12.b1)MSMg01-493D12.TJ (MSMg01no493_d12.g1)
ACCAG570790AG570791
length1,129747
length of high quality
(start - end)		---630 (73 - 702)
definitionCHROMAT_FILE: MSMg01no493_d12.b1 PHD_FILE: MSMg01no493_d12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:17:40 2005CHROMAT_FILE: MSMg01no493_d12.g1 PHD_FILE: MSMg01no493_d12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:17:40 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CATTCTCTCTCGTGACACCGTAAGCGCAGCGTCTTCCTTTCTCCCCTGAT
CTGTCCCGGAAGTTTAATTGTGTGCCATTCGTCTATGCTGGGACGGCTAT
ACCGACATTCCCTCTTCTCACCCCAGCACTGTATTCACCGCACATTGCGT
TGATGAGAATACAGCAGATCTGTGTTGAGCGCTGAGTGGATTGTGATCGG
TGGTTTGTTGAGTCGCNTAAAAAACATAAATAGACCATATAAATATCTCA
TAATAATCACAGTAGAATGTCATACCTAACGGATAGGACGTATTGTGATC
CTGAGGAACAAAAAATGCCACACTCGGTGAGTTGGACCTGGGCGTCTTTC
TCTCTCAGCGCGCGGCTGTTCGGGCTCTCTCCGTGTAGCGTTTCGCGCCG
TTGAAGCCCCGCGATGTTAGACTACATCGTATGGAGGTACTACCCATTAT
ATCACTATCTCAGCATTGCCCGCGTCGATTGCCCCTCTTGCGTTGGTTCT
GGCAGGGCGCGTTGTGGCTACGCGCCCCCGTAATTGCAAGTAACAGATAG
AACAGAGAACCGGAAGCCCGATCGTCAGACGATAATACATGACACATATG
ATTTATGTAGAGAAAGACGTCTACTGACACCCTCATCAACTCTTGAGCGC
CGCAGTTCTTTAACTCTGGAAGTACAGAGAGCATGTTTGATTCGNTCGAC
CACGCGATTAGATCACGACTCTATGGATTACGATGATAACATAGCGACGA
CAACATGTAAGAACATGGTGAGGAAGAGTGCGATGCGTGATGCGACTAAA
TATACACCCCACCAGCCCGAGTAGCCTCGCACGTATGTACGTCGCGCCTG
AGTGCTGTTTTCCCCAATCGTGACGATGTATGTCGACAGAGCGCTACGCT
CTACAACAACCAATGATGATAGAATTAGTTGAGCTATAGAGTGGAGAATG
AGTGAGCGACTGAACGCGAGGCAGGGGCAGAGCGTCAATCGAGAAGCGAC
CGGNTGACACGGTGTGTGAGGTGCTGAGAGACATACCACACACACTATTG
TGCATCTGCGGGTGCACAGTATGAAGTTCACAAGATATGTATACGAATGA
ATAGTGACTACTGAACTACTCATGTTCAG

CAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXAGATGGAGTCACCCACCCCAAGTGGGCA
GTGTCACCTGAAGAGGTGACCTGGTTCAGCTTAGGTTGTTTGTTTGTTTG
TTTTGTTTTGCTTTTGGCACTGGAAATATCATTTATAGCTCAATTTTAAT
TTTTTTTTAATGTACTGTGCTCTTTGGGTCCCTGCCGCTTCCTTCCAGGG
GAGCCTGGTTCTGTGGTCAGTCTTGGTCCCCAAGTTCAGGTCTGCCCTGG
CTGTCCAGGTCTGTTGTTGGTTCTCATCCTGAGGAGGATGTGTGGAGGAT
ACCCACTCTCAGGAGAGACTCTCAGAGGGGCAATGAGGTAGGATTGATGC
TCCCGGCCACAGAAAGTCCGCTCTTGGGGTTGCTTTGTCCAGGAGGGAAT
CGGGGTTCCTAATGTACCCTAGCTCCTAGCTCATGGCCTTTTAACCTTAC
CTGTCTAGGACAGTCAGTTTCTGAAAATAGCAATTGCCCGAGGTGAGGAC
AGCAAGATATGGCTTGTAGTGAGTGATACTGTGTGTGGCCGGGCTCTCAC
ACAGCATGTAGATCCTCTTTGGCCTGGCTCCTTTTGTATCCCATAGCACA
GGTAGAAGTGGGTGGGACTGAGCGCTGCATAGGGTCCCAGAACCTTGTCT
CCTGGAAGGCCCTGTGTTTCTGGGAAGAAGCTTGCTCATTTGGTTAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no493_d12.g1 MSMg01no493_d12.g1 CHROMAT_FILE:
MSMg01no493_d12.g1 PHD_FILE: MSMg01no493_d12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:17:40 2005
         (630 letters)



>mm_chr8_125038101_125039129
          Length = 1029

 Score = 1133 bits (586), Expect = 0.0
 Identities = 611/624 (97%), Gaps = 9/624 (1%)
 Strand = Plus / Minus

                                                                       
Query: 7   agtcacccaccccaagtgggcagtgtcacctgaagaggtgacctggttcagcttaggttg 66
           |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||   
Sbjct: 886 agtcacccaccccaagtgggtagtgtcacctgaagaggtgacctggttcagcttagg--- 830

                                                                       
Query: 67  tttgtttgtttgttttgttttgcttttggcactggaaatatcatttatagctcaatttta 126
                |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 829 -----ttgtttgttttgttttgcttttggcactggaaatatcatttatagctcaatttta 775

                                                                       
Query: 127 atttttttttaatgtactgtgctctttgggtccctgccgcttccttccaggggagcctgg 186
           | ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 774 a-tttttttaaatgtactgtgctctttgggtccctgccgcttccttccaggggagcctgg 716

                                                                       
Query: 187 ttctgtggtcagtcttggtccccaagttcaggtctgccctggctgtccaggtctgttgtt 246
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 715 ttctgtggtcggtcttggtccccaagttcaggtctgccctggctgtccaggtctgttgtt 656

                                                                       
Query: 247 ggttctcatcctgaggaggatgtgtggaggatacccactctcaggagagactctcagagg 306
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 655 ggttctcatcctgaggaggatgtgtggaggatacccactctcaggagagactctcagagg 596

                                                                       
Query: 307 ggcaatgaggtaggattgatgctcccggccacagaaagtccgctcttggggttgctttgt 366
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 595 gacaatgaggtaggattgatgctcccggccacagaaagtccgctcttggggttgctttgt 536

                                                                       
Query: 367 ccaggagggaatcggggttcctaatgtaccctagctcctagctcatggccttttaacctt 426
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 535 ccaggagggaatcggggttcctaatgtaccctagctcctagctcatggccttttaacctt 476

                                                                       
Query: 427 acctgtctaggacagtcagtttctgaaaatagcaattgcccgaggtgaggacagcaagat 486
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 475 acctgtctaggacagtcagtttctgaaaatagcaattgcccgaggtgaggacagcaagat 416

                                                                       
Query: 487 atggcttgtagtgagtgatactgtgtgtggccgggctctcacacagcatgtagatcctct 546
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 415 atggcttgtagtgagtgatactgtgtgtggccgggctctcacacagcatgtagatcctct 356

                                                                       
Query: 547 ttggcctggctccttttgtatcccatagcacaggtagaagtgggtgggactgagcgctgc 606
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 355 ttggcctggctccttttgtatcccatagcacaggtagaagtgggtgggactgagcgctgc 296

                                   
Query: 607 atagggtcccagaaccttgtctcc 630
           ||||||||||||||||||||||||
Sbjct: 295 atagggtcccagaaccttgtctcc 272


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 630
Length of database: 1029
Length adjustment: 10
Effective length of query: 620
Effective length of database: 1019
Effective search space:   631780
Effective search space used:   631780
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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