BAC Information

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BAC

Clone NameMSMg01-493E01
Chromosome8 (Build37)
Map Location 125,829,976 - 125,971,158
singlet/doubletdoublet
Overlap geneFanca, Spire2, Tcf25, Mc1r, Tubb3, Def8
Upstream geneZfpm1, Trhr2, 5830416A07Rik, Il17c, Cyba, Mvd, Snai3, Rnf166, 2310061F22Rik, Cdt1, Aprt, Galns, Trappc2l, Pabpnl1, Cbfa2t3h, C230057M02Rik, A530010L16Rik, BC021611, LOC100043225, Cdh15, Ankrd11, Spg7, Rpl13, Cpne7, Sult5a1, LOC100043251, Dpep1, Chmp1a, 4732415M23Rik, Cdk10, Spata2L, 1300018I17Rik, Zfp276
Downstream geneAfg3l1, Dbndd1, Gas8, Rn5s-ps1, Rhou, LOC100042484, LOC100042490, Rab4a, 1700054N08Rik, LOC100043296, Acta1, Nup133, Abcb10, Taf5l, AK122209, LOC100042530, LOC100042535, Galnt2, Pgbd5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-493E01.T7 (MSMg01no493_e01.b1)MSMg01-493E01.TJ (MSMg01no493_e01.g1)
ACCAG570816AG570817
length732743
length of high quality
(start - end)
302 (312 - 613)606 (72 - 677)
definitionCHROMAT_FILE: MSMg01no493_e01.b1 PHD_FILE: MSMg01no493_e01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:17:42 2005CHROMAT_FILE: MSMg01no493_e01.g1 PHD_FILE: MSMg01no493_e01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:17:42 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(125,829,976 - 125,830,277)(125,970,553 - 125,971,158)
sequence
AATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTCTGTTACTTCCCCACAGCACGTATGTCCGGAGTAGATAGGAATCCTG
CAAATGACATGAGGGGGTGGCCAAGAGGGAAAGCACTGTTCATAGCCGGG
ATCCTGTCCAAGAACCAACGGGGCTCACCATCATGCAAGCCAGGAAATGA
CTTTCTCAACGAGGCCAGGAAGCCACGCGTGTCATGTGAATCATGGAGCA
TGGGGTTTCGTGCAAGAGAGAAGTGAGCCATCTTGTGATGTCAAGAGTCC
GGAAGCAGGCGAGGAGATTAGACACACTAGGAGGGCAGGAGCTGCATACC
ACGGCGGAAGACAGACACGTGGGAGGGAGGTCACACACACAGGACAGAAA
AGTGGGCCTGAAGGACCTTCAGGGTCCCACATCCTAGAAATCTGGAGGCT
GAACAGGATTCTACAATAAGAAAGAGAACTCATGCCCTACCTCAGAAAAG
GCTGGAGAGACCCCCTGGGCTTTAGCAACAATCTTCCCCGAGGTCTCCAA
CCAGCAGAGGGTACCCAGCTGGTTACTGCTACCACCCAAGAGTTTAAGAT
GCCATGCTTCATAGCCAAGTAAGAACGTCTTTCACACGAACAGCAGGCTC
GCAGACGTACCAGCCACTCACTGCCTGGCAATCCAAAGTCGTCTGTGGAT
CAGCCTCCAGGTATCAAGTGAAACTGACGACN
TACTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTCTGGAGTTAAATCCAAGGTCCATCCTTG
GCCTGCTATTGGCAGGGTGACCTAGGCCCCTCCCCGGGCCCCAACAATGC
AACTGGGTTCTAGTAGGAGATGGTACCTCTTAAGCTTCAGTTCCTGTCCT
ACGTCACGACCACATGGCCTGAGCTGTCCCTGCCATGGGATTGCGTGTAG
CAGAAGTGTTCAGGTCCGCACTTGTCAGAAGTTAAGATCACCAGACACTC
TGTCCCCTCCCTAGGGCTCATCCCACAATGGGAACACAAAATCTGGTGGC
TCCTGGCAGAAGGGAGGGGCTGTCTGTGTCTGAATGAACCAGGAGCAGTT
GGAATGCAGTTCTCCACTTATCTAGTCAAGCCACATTCCATAGCTTCTCT
CCGCCTCTGCTCCCTCATCCAGAGGTGGGTCACTATGGGTGAAATTATTC
ATAGACCCTGAGCACAAAATAACATCTGTACATGCCAGGTGTGGCGTTGC
ATGCATTTAATCCCAGCACTGGGAAGGCAGAAGCAGGCAGATCTCTGAGT
TAGAGGATAGCCTGGTCTACAGAGCAAACCCTGTCTTGAAAACAAACATC
TATACAAGGTTTGCTATGATGATGGGAAGTCAGAGGTGAGTGTAGAGCGG
GGCCATGGGCGCCTGGGGACGTAGTGTGCTTTCTCCGTGCCTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no493_e01.b1 MSMg01no493_e01.b1 CHROMAT_FILE:
MSMg01no493_e01.b1 PHD_FILE: MSMg01no493_e01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:17:42 2005
         (302 letters)



>mm_chr8_125829776_125830477
          Length = 702

 Score =  561 bits (290), Expect = e-164
 Identities = 299/302 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aggagattagacacactaggagggcaggagctgcataccacggcggaagacagacacgtg 60
           ||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||
Sbjct: 201 aggagattagacacactaggaaggcaggagctgcataccacagcggaagacagacacgtg 260

                                                                       
Query: 61  ggagggaggtcacacacacaggacagaaaagtgggcctgaaggaccttcagggtcccaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 261 ggagggaggtcacacacacaggacagaaaagtgggcctgaaggaccttcagggtcccgca 320

                                                                       
Query: 121 tcctagaaatctggaggctgaacaggattctacaataagaaagagaactcatgccctacc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcctagaaatctggaggctgaacaggattctacaataagaaagagaactcatgccctacc 380

                                                                       
Query: 181 tcagaaaaggctggagagaccccctgggctttagcaacaatcttccccgaggtctccaac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcagaaaaggctggagagaccccctgggctttagcaacaatcttccccgaggtctccaac 440

                                                                       
Query: 241 cagcagagggtacccagctggttactgctaccacccaagagtttaagatgccatgcttca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cagcagagggtacccagctggttactgctaccacccaagagtttaagatgccatgcttca 500

             
Query: 301 ta 302
           ||
Sbjct: 501 ta 502


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 302
Length of database: 702
Length adjustment: 9
Effective length of query: 293
Effective length of database: 693
Effective search space:   203049
Effective search space used:   203049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no493_e01.g1 MSMg01no493_e01.g1 CHROMAT_FILE:
MSMg01no493_e01.g1 PHD_FILE: MSMg01no493_e01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:17:42 2005
         (606 letters)



>mm_chr8_125970497_125971502
          Length = 1006

 Score = 1125 bits (582), Expect = 0.0
 Identities = 600/606 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctggagttaaatccaaggtccatccttggcctgctattggcagggtgacctaggcccct 60
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 662 tctggagttaaatccaaggcccatccttggcctgctattggcagggtgacctaggcccct 603

                                                                       
Query: 61  ccccgggccccaacaatgcaactgggttctagtaggagatggtacctcttaagcttcagt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 602 ccccgggccccaacaatgcaactgggttctagtaggagatggtacctctcaagcttcagt 543

                                                                       
Query: 121 tcctgtcctacgtcacgaccacatggcctgagctgtccctgccatgggattgcgtgtagc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 542 tcctgtcctacgtcacgaccacatggcctgagctgtccctgccatgggattgcgtgtagc 483

                                                                       
Query: 181 agaagtgttcaggtccgcacttgtcagaagttaagatcaccagacactctgtcccctccc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 agaagtgttcaggtccgcacttgtcagaagttaagatcaccagacactctgtcccctccc 423

                                                                       
Query: 241 tagggctcatcccacaatgggaacacaaaatctggtggctcctggcagaagggaggggct 300
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 tagggctcagcccacaatgggaacacaaaatctggtggctcctggcagaagggaggggct 363

                                                                       
Query: 301 gtctgtgtctgaatgaaccaggagcagttggaatgcagttctccacttatctagtcaagc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 gtctgtgtctgaatgaaccaggagcagttggaatgcagttctccacttatctagtcaagc 303

                                                                       
Query: 361 cacattccatagcttctctccgcctctgctccctcatccagaggtgggtcactatgggtg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 302 cacattccatagcttctctccgcctctgctccctcatccagaggtgggtcactgtgggtg 243

                                                                       
Query: 421 aaattattcatagaccctgagcacaaaataacatctgtacatgccaggtgtggcgttgca 480
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 242 aaattattcatagaccctgagcacaaaataacatctgtacatgccaggtgtggcattgca 183

                                                                       
Query: 481 tgcatttaatcccagcactgggaaggcagaagcaggcagatctctgagttagaggatagc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 182 tgcatttaatcccagcactgggaaggcagaagcaggcagatctctgagttagaggatagc 123

                                                                       
Query: 541 ctggtctacagagcaaaccctgtcttgaaaacaaacatctatacaaggtttgctatgatg 600
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 122 ctggtctacagagcaaaccctgtcttgaaaacaaacatctatacaaggtttgctatgacg 63

                 
Query: 601 atggga 606
           ||||||
Sbjct: 62  atggga 57


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 606
Length of database: 1006
Length adjustment: 10
Effective length of query: 596
Effective length of database: 996
Effective search space:   593616
Effective search space used:   593616
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)