Query= MSMg01no493_f05.b1 MSMg01no493_f05.b1 CHROMAT_FILE:
MSMg01no493_f05.b1 PHD_FILE: MSMg01no493_f05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:17:48 2005
(662 letters)
>mm_chr8_90573776_90574837
Length = 1062
Score = 1183 bits (612), Expect = 0.0
Identities = 640/658 (97%), Gaps = 15/658 (2%)
Strand = Plus / Plus
Query: 5 gaattcagtaatcctttgtttgtgctttgtttagttagttccttaactactctgcttatg 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 220 gaattcagtaatcctttgtttgtgctttgtttagttagttccttaactactctgcttatg 279
Query: 65 gcttaagactgaccatatcctttgtatgtaaccagaatgatataaaagcagactggaaag 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 280 gcttaagactgaccatatcctttgtatgtaaccagaatgatataaaagcagactggaaag 339
Query: 125 aaataagcccacttcagcttcagcctcagcactggctggagtcaggttatggtgttgtct 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 aaataagcccacttcagcttcagcctcagcactggctggagtcaggttatggtgttgtct 399
Query: 185 aattgtctttttcttttcaatcctcactcctccctcaagaccttgttgactgactgagct 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 aattgtctttttcttttcaatcctcactcctccctcaagaccttgttgactgactgagct 459
Query: 245 ggcttggtcaccatgtcaactaaaaaaaagaaagaaaggaagaaagaaagaaagaaagaa 304
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 460 ggcttggtcaccatgtcaactaaaaaaaagaaag----gaagaaagaaagaaagaaagaa 515
Query: 305 agaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaagtccaaagccagggag 364
|||||||||||||||||||||||||||||| ||| |||||||||||||||
Sbjct: 516 agaaagaaagaaagaaagaaagaaagaaagtaag-----------tccaaagccagggag 564
Query: 365 agggaattccatgagtgttgatgtgcagacggagttgttatacttacccagactttgttt 424
||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 565 aggaaattccatgagtgttgatgtgcagacagagttgttatacttacccagactttgttt 624
Query: 425 caacgtgtggtatggaagtagagaaggagaaggctggggatagaagggtttagatgcaat 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 caacgtgtggtatggaagtagagaaggagaaggctggggatagaagggtttagatgcaat 684
Query: 485 ggaggtggctgttttagtggcagatggggttatgtcatcaacagtcttactcagttgtgg 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 ggaggtggctgttttagtggcagatggggttatgtcatcaacagtcttactcagttgtgg 744
Query: 545 atcttacacactgtaatactgaccagtctggcacaatgtgctcttgatgttattataatg 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 atcttacacactgtaatactgaccagtctggcacaatgtgctcttgatgttattataatg 804
Query: 605 gcttaaacgttatgaaggtaatcaagtccttattactgaattcgagacctgttctaca 662
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 gcttaaacgttatgaaggtaatcaagtccttattactgaattcgagacctgttctaca 862
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 58
Number of extensions: 16
Number of successful extensions: 16
Number of sequences better than 10.0: 1
Number of HSP's gapped: 10
Number of HSP's successfully gapped: 1
Length of query: 662
Length of database: 1062
Length adjustment: 10
Effective length of query: 652
Effective length of database: 1052
Effective search space: 685904
Effective search space used: 685904
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no493_f05.g1 MSMg01no493_f05.g1 CHROMAT_FILE:
MSMg01no493_f05.g1 PHD_FILE: MSMg01no493_f05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:17:48 2005
(467 letters)
>mm_chr8_90731597_90732463
Length = 867
Score = 859 bits (444), Expect = 0.0
Identities = 459/464 (98%), Gaps = 2/464 (0%)
Strand = Plus / Minus
Query: 5 tttttttttcaatgcaaggctagaaaacagggactttgtgcatataggattaaaaaaaag 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 tttttttttcaatgcaaggctagaaaacagggactttgtgcatataggattaaaaaaaag 489
Query: 65 gttctaccaccgagctgcaatcccagatatgattgagatggaaagtaagggcatgactta 124
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 attctaccaccgagctgcaatcccagatatgattgagatggaaagtaagggcatgactta 429
Query: 125 tt-gtgcagggttactccaatcaatctggtatgaccacagcacaggagctgcctggtatc 183
|| | |||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 428 ttag-gcagggttactccaatcagtctggtatgaccacagcacaggagctgcctggtatc 370
Query: 184 acctattagaagaaaagagctgtactacagtacattggccacggcaagtactggagagat 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 acctattagaagaaaagagctgtactacagtacattggccacggcaagtactggagagat 310
Query: 244 agattctggaccccttcatacaggaacttggcatgatgcagccactgtagaaaatggctt 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 agattctggaccccttcatacaggaacttggcatgatgcagccactgtagaaaatggctt 250
Query: 304 agttttgattctcagcctcctaaaatcaagtgtagaaagtggaaggagtctaggaagatg 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 agttttgattctcagcctcctaaaatcaagtgtagaaagtggaaggagtctaggaagatg 190
Query: 364 tcctagtgagtacagtgattgctatgcaagcatgaagacctgagtttagatctgactcct 423
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 189 tcctagtgagtacagtgattgctatgcaagcatgaagacctgagtttagatatgactcct 130
Query: 424 gaagacaaggtggatggtggcagtgcctgtctgtaatcacaatg 467
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129 gaagacaaggtggatggtggcagtgcctgtctgtaatcacaatg 86
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 467
Length of database: 867
Length adjustment: 10
Effective length of query: 457
Effective length of database: 857
Effective search space: 391649
Effective search space used: 391649
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
