Query= MSMg01no493_k04.b1 MSMg01no493_k04.b1 CHROMAT_FILE:
MSMg01no493_k04.b1 PHD_FILE: MSMg01no493_k04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:18:15 2005
(663 letters)
>mm_chr8_26501055_26502117
Length = 1063
Score = 1224 bits (633), Expect = 0.0
Identities = 651/657 (99%), Gaps = 2/657 (0%)
Strand = Plus / Minus
Query: 7 ggaattctaattaaatgtgaactcctgggtcttacttaccagctgctcagctacagaccc 66
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 797 ggaattctaattaaatgtgaactcctgggtcttacttaccagctgctcagctacagaccc 738
Query: 67 tgccttctgaggccctgcccggctagccataccctttaatgacacccgcaacaaatgggg 126
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 737 tgccttctgaggccctgcccggctagccataccctttaatgacacccgcaacaaatgggg 678
Query: 127 atcccttgcttttctccacgggggcctgtggaagtctgagcctgctactggtccttaggc 186
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 atcccttgcttttctccacgggggcctgtggaagtctgagcctgctactggtccttaggc 618
Query: 187 tttgatccaactgttagagaaacacttttgatggtctcatatcccagtagggatctgtct 246
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 tttgatccaactgttagagaaacacttttgatggtctcatatcccagtagggatctgtct 558
Query: 247 gtccctaccattccttttgccgtcccccttacaaccaatcaagttgtttttagatgtcca 306
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 557 gtccctaccattccttttgccgtccccctcacaaccaatcaagttgtttttagatgtcca 498
Query: 307 ggcatccagcaaactcaggggtgggaatccccttctctagcaacccccaaagtatcacgg 366
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 ggcatccagcaaactcaggggtgggaatccccttctctagcaacccccaaagtatcacgg 438
Query: 367 taggaatagcagtacccagctgtcatatgtggcaaccttcaagatccctacttctataac 426
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 437 taggaatagcagtacccagctgtcatatgtggcaaccttcaagatccctacctctataac 378
Query: 427 gtggatagggatagaacactttccatatagatatgcttgtggtgtgggtaggattcacgt 486
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 gtggatagggatagaacactttccatatagatatgcttgtggtgtgggtaggattcacgt 318
Query: 487 gggcaaagaggaagcccaagggatgacaaacagttgtcttgtacatatttaaggggtggg 546
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 gggcaaagaggaagcccaagggatgacaaacagttgtcttgtacatatttaaggggtggg 258
Query: 547 ggtatctgcacattagacattcttgattcccaatcccaatttcatgttgccttgttgtgt 606
||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct: 257 ggtatctgcacattagacattcttgattcccaatcccaaattcatgttgccctgttgtgt 198
Query: 607 cccg-ccagcggctcacatgtctgggttctagtctggaaaggcatcttggaaacctg 662
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 197 -ccgaccagcggctcacatgtctgggttctagtctggaaaggcatcttggaaacctg 142
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 663
Length of database: 1063
Length adjustment: 10
Effective length of query: 653
Effective length of database: 1053
Effective search space: 687609
Effective search space used: 687609
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no493_k04.g1 MSMg01no493_k04.g1 CHROMAT_FILE:
MSMg01no493_k04.g1 PHD_FILE: MSMg01no493_k04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:18:15 2005
(545 letters)
>mm_chr8_26308758_26309702
Length = 945
Score = 1038 bits (537), Expect = 0.0
Identities = 543/545 (99%)
Strand = Plus / Plus
Query: 1 tcttcccattaatacacacaaggtttgtttccctcacttctcaacccttttaggaatctc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcttcccattaatacacacaaggtttgtttccctcacttctcaacccttttaggaatctc 260
Query: 61 ttcaagtaagctccgccccccttaactaacttccagcatttactagccaggcccacaggc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttcaagtaagctccgccccccttaactaacttccagcatttactagccaggcccacaggc 320
Query: 121 cactgccccacccccaccccatggttcaccacagtacttaacagaacccaacagacattt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cactgccccacccccaccccatggttcaccacagtacttaacagaacccaacagacattt 380
Query: 181 tccttttaacccttaaaagggtcactcctgtggtagtttgtatgtgtctggcccaggaaa 240
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tccttttaacccttaaaaggttcactcctgtggtagtttgtatgtgtctggcccaggaaa 440
Query: 241 tggcatgattaggaggtgtggccttgttggagtgggtgtggccttgttggaggaggtgtg 300
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tggcacgattaggaggtgtggccttgttggagtgggtgtggccttgttggaggaggtgtg 500
Query: 301 gccttgttggaggaagtgtgtcactgtgggggaggactttgagaccctcctactagctat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gccttgttggaggaagtgtgtcactgtgggggaggactttgagaccctcctactagctat 560
Query: 361 gtgggagccagttttattctagcagccttcagatgaagatgcagaactctcagctcctcc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gtgggagccagttttattctagcagccttcagatgaagatgcagaactctcagctcctcc 620
Query: 421 tgcaccatgcctgcctagatgctgccatgttcccaccttgacaataatggactgaacttc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tgcaccatgcctgcctagatgctgccatgttcccaccttgacaataatggactgaacttc 680
Query: 481 tgaaccagtaagccagcccgggttaaatgttgtcctttataagagttgccttggggctgg 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tgaaccagtaagccagcccgggttaaatgttgtcctttataagagttgccttggggctgg 740
Query: 541 agaga 545
|||||
Sbjct: 741 agaga 745
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 545
Length of database: 945
Length adjustment: 10
Effective length of query: 535
Effective length of database: 935
Effective search space: 500225
Effective search space used: 500225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
