Query= MSMg01no493_k17.b1 MSMg01no493_k17.b1 CHROMAT_FILE:
MSMg01no493_k17.b1 PHD_FILE: MSMg01no493_k17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:18:18 2005
(655 letters)
>mm_chr8_15961356_15962405
Length = 1050
Score = 1129 bits (584), Expect = 0.0
Identities = 631/650 (97%), Gaps = 9/650 (1%)
Strand = Plus / Plus
Query: 4 ggaattccacaggattcac--ctgaaaggataagaagaaaaccatgcttatcctcacaag 61
|||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattccacagga--cacagctgaaaggataagaagaaaaccatgcttatcctcacaag 261
Query: 62 actgtattaaaatttgtcattaggtttcaactcagagacagagctattaatcatgttctt 121
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 actgtgttaaaatttgtcattaggtttcaactcagagacagagctattaatcatgttctt 321
Query: 122 catgtctgtcaaaagtacacacattttcagaattttaaggatgcaaaatattcatgagaa 181
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 322 catgtctgtcaaaagtacacacattttcagaattgtaaggatgcaaaatattcatgagaa 381
Query: 182 acagtggaagacttattgaagtggtagaaaacagttcagtgtcaaacactgtatctgaga 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 acagtggaagacttattgaagtggtagaaaacagttcagtgtcaaacactgtatctgaga 441
Query: 242 gatactggagggtctgggtgatgactttcacttagacacaggctagtcacagtcggcatg 301
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 442 gatactggagggtctgggtgatgacttccacttagacacaggctagtcacagtcggcatg 501
Query: 302 attgtttcgttgtgtgttcaagtatcaatcacacattctaccttgggtgactgtggagag 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 attgtttcgttgtgtgttcaagtatcaatcacacattctaccttgggtgactgtggagag 561
Query: 362 aaggacaggtgtaggccatttctttgccatctcaacaatggctttgactatcaagaccca 421
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct: 562 aaggacaggtgtaggccacttctttgccatctcaacaatggctttgactatcaagactca 621
Query: 422 caggaattaggcatgaatgtgcagctgcccacctccctttcctctccacttttcccaact 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 caggaattaggcatgaatgtgcagctgcccacctccctttcctctccacttttcccaact 681
Query: 482 tctcttcttcaacacatagcttcttgttaaagatgctgtgctttgcctggcagacccttc 541
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 tctcttcttcaacacatagcttcttgttaaagatgctgtgctttgcctggcagacccttc 741
Query: 542 gccagctcctgtgttgggactgtgatctccattgtatccattgtagaagcaaggtgtaag 601
||| ||||||| ||||||| ||||||||||||||||||| |||||||||| |||||||||
Sbjct: 742 gccggctcctgcgttgggaatgtgatctccattgtatcctttgtagaagcgaggtgtaag 801
Query: 602 aactttaagagctgggggggggcgctctggaggttctcatcctgaaagca 651
|||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct: 802 aactttaagagctggggg----c-ctctggaggttctcatcctgaaagca 846
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 655
Length of database: 1050
Length adjustment: 10
Effective length of query: 645
Effective length of database: 1040
Effective search space: 670800
Effective search space used: 670800
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no493_k17.g1 MSMg01no493_k17.g1 CHROMAT_FILE:
MSMg01no493_k17.g1 PHD_FILE: MSMg01no493_k17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:18:18 2005
(467 letters)
>mm_chr8_16149189_16150055
Length = 867
Score = 737 bits (381), Expect = 0.0
Identities = 420/433 (96%), Gaps = 1/433 (0%)
Strand = Plus / Minus
Query: 19 tatcttattgattgtgttatttgatttttagagtctaatattttggacattagccctctg 78
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 867 tatcttattgattgtgttatttgatttttagagtctaatattttggacattagatctctg 808
Query: 79 tcagatttagggctagag-aagatctttccccaattgtaggctgcaattttgtcctattg 137
|||||||||||||||||| || ||||||||||||||||||||||| ||||||||||||||
Sbjct: 807 tcagatttagggctagagaaaaatctttccccaattgtaggctgccattttgtcctattg 748
Query: 138 acagtgttatttgccttacaaaaggttttcagtttcatgaggtcccatttattaatactt 197
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 747 acagtgttatttgccttacaaaaggttttcagtttcatgaggtcccatttattaatactt 688
Query: 198 gaccttagtgccagagctattggtgttctgtttaggaaattttctcctggcatcacaact 257
||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 687 gaccttagtgccagagccattggtgttctgtttaggaaattttctcctgtcatcacaact 628
Query: 258 ttttaattcaaagaaattaaacaataaataagtgaagagagaggcataagcatttgtaaa 317
||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 627 tttcaattcaaagaaattaaacaataaataagcaaagagagaggcataagcatttgtaaa 568
Query: 318 taatttactcaattgatattcaactcacctacccgtaactttgatgaagtaactcatttc 377
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 taatttactcaattgatattcaactcacctacccgtaactttgatgaagtaactcatttc 508
Query: 378 agaaaacaggcttgacttttgaaaatggtggcttggaaaacaaccaaagtacatattgtg 437
|||||||| |||||||||| |||||||||||||||||||||||| |||||||||||||||
Sbjct: 507 agaaaacaagcttgactttagaaaatggtggcttggaaaacaactaaagtacatattgtg 448
Query: 438 ttttttttttttt 450
|||||||||||||
Sbjct: 447 ttttttttttttt 435
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 467
Length of database: 867
Length adjustment: 10
Effective length of query: 457
Effective length of database: 857
Effective search space: 391649
Effective search space used: 391649
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
