NNAACTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCTTAAAAATTACATAAATTAAGTCTCCATAGGCAGTAGAAC
CCTAAATGATGTTGAGTGTCTCTGCACTGACTGTCACTTTTTAAAAAAAA
AATTTATAGGAGAGACATGACATGATTTCAGATTTTAATAGCTGGTTAAA
ATCTGGCTGGCATGGGTTTGCAGATCAATAATATCAGCTTCATCTCATTT
AACTACATCTGACTCCAGGCAAGGGCAAGAGGATCAATTCTCCCTGTGAT
GGTGGGATGCTAAACCAGTACCTCCAAGGGCTTTTCCAGAATATTAAGCC
ATAAATATCCACTTGCCTACAGAGGAGCTTCTCTCTCCAGCCCCTTCACA
GACATCTCCTTGTCTTTTCTCCTCAACTTCCCTGGAGGACTTGAGATGTC
GTAAGTACTTGCTCACTCCACAAATCAAAGTATGTTTTTAAAAAGCTGGG
TTTTCCCCTTCACATCCAATAAATAATCAGCCAGAAATGACACAAGTGTA
GCCCAAAAGCAAACAAAAACAAACAAACAAAAAAAACTAGTCTCAAATGT
TCCACTATTTATAGGAAAATAATTCTCTAAGTTAGATTTACTTGGATAAT
AGTCTCCTTTATGAAAAATGTCTAAGTCATAATTCAGATTTGTCTGCTAA
GCAATCCAGTGATAGACCCAAAGCA

CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAGA
GAAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAA
TCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGTCTAAGATC
AAAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGAAC
ACTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAAAT
CAGTCTGGCGGTTCCTCAGAAAATTGGACATAGTACTACCGGAGGATCCA
GCAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACTGGTAAGAA
GGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAA
GCTGGAAAGAACCCAGATGCCCTTCAACAGAGGAATGGATACAGAAAATG
TGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATT
TATGAAATTCCTAGGCAAATGGATGGACCTGGAGGGCATCATCCTGAGTG
AGGTAACACATTCACAAAGGAACTCACACAATATGTACTCACTGATAAGT
GGATATTAGCCCAAAACCTAGGATACCCAAGATATAAGATACAATTTCCT
AAACACATGAAACTCAAGAAAAATGAAGACTGAAG

Query= MSMg01no493_l15.b1 MSMg01no493_l15.b1 CHROMAT_FILE:
MSMg01no493_l15.b1 PHD_FILE: MSMg01no493_l15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:18:23 2005
         (675 letters)



>mm_chr8_115452406_115453481
          Length = 1076

 Score = 1228 bits (635), Expect = 0.0
 Identities = 664/677 (98%), Gaps = 8/677 (1%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcttaaaaattacataaatt-----aagtctccataggcagtagaaccctaaatga 59
           |||||||||||||| | |||||||     |||||||||||||||||||||||||||||||
Sbjct: 983 gaattcttaaaaatcaaataaattaagtaaagtctccataggcagtagaaccctaaatga 924

                                                                       
Query: 60  tgttgagtgtctctgcactgactgtcactttttaaaaaaaaaatttataggagagacatg 119
           || |||||||||||||||||||||||| ||||||||||||||  ||||||||||||||||
Sbjct: 923 tgctgagtgtctctgcactgactgtcattttttaaaaaaaaa--ttataggagagacatg 866

                                                                       
Query: 120 acatgatttcagattttaatagctggttaaaatctggctggcatgggtttgcagatcaat 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 865 acatgatttcagattttaatagctggttaaaatctggctggcatgggtttgcagatcaat 806

                                                                       
Query: 180 aatatcagcttcatctcatttaactacatctgactccaggcaagggcaagaggatcaatt 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 aatatcagcttcatctcatttaactacatctgactccaggcaagggcaagaggatcaatt 746

                                                                       
Query: 240 ctccctgtgatggtgggatgctaaaccagtacctccaagggcttttccagaatattaagc 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 ctccctgtgatggtgggatgctaaaccagtacctccaagggcttttccagaatattaagc 686

                                                                       
Query: 300 cataaatatccacttgcctacagaggagcttctctctccagccccttcacagacatctcc 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 cataaatatccacttgcctacagaggagcttctctctccagccccttcacagacatctcc 626

                                                                       
Query: 360 ttgtcttttctcctcaacttccctggaggacttgagatgtcgtaagtacttgctcactcc 419
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ctgtcttttctcctcaacttccctggaggacttgagatgtcgtaagtacttgctcactcc 566

                                                                       
Query: 420 acaaatcaaagtatgtttttaaaaagctgggttttccccttcacatccaataaataatca 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 acaaatcaaagtatgtttttaaaaagctgggttttccccttcacatccaataaataatca 506

                                                                       
Query: 480 gccagaaatgacacaagtgtagcccaaaagcaaacaaaaacaaacaaac-aaaaaaaact 538
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 505 gccagaaatgacacaagtgtagcccaaaagcaaacaaaaacaaacaaacaaaaaaaaact 446

                                                                       
Query: 539 agtctcaaatgttccactatttataggaaaataattctctaagttagatttacttggata 598
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 agtctcaaatgttccactatttataggaaaataattctctaagttagatttacttggata 386

                                                                       
Query: 599 atagtctcctttatgaaaaatgtctaagtcataattcagatttgtctgctaagcaatcca 658
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 atagtctcctttatgaaaaatgtctaagtcataattcagatttgtctgctaagcaatcca 326

                            
Query: 659 gtgatagacccaaagca 675
           |||||||||||||||||
Sbjct: 325 gtgatagacccaaagca 309


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 40
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 675
Length of database: 1076
Length adjustment: 10
Effective length of query: 665
Effective length of database: 1066
Effective search space:   708890
Effective search space used:   708890
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)