BAC Information

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BAC

Clone NameMSMg01-494H19
Chromosome8 (Build37)
Map Location 85,444,964 - 85,602,912
singlet/doubletdoublet
Overlap geneRnf150
Upstream geneInpp4b, LOC671182, Il15, EG666564, LOC675800, EG666289, Zfp330
Downstream geneLOC100039688, Tbc1d9, Ucp1, Elmod2, 4933434I20Rik, Clgn, Scoc, LOC546077, LOC675854, Olfr370, Ndufb7, Gpsn2, Dnajb1, Gipc1, Ptger1, Pkn1, Ddx39, Cd97, EG384857, Lphn1, Asf1b, Prkaca, Samd1, 1700067K01Rik, 2210011C24Rik, 4432412L15Rik, Il27ra, Rln3, C330011M18Rik, Rfx1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-494H19.T7 (MSMg01no494_h19.b1)MSMg01-494H19.TJ (MSMg01no494_h19.g1)
ACCAG571755AG571756
length758756
length of high quality
(start - end)		660 (54 - 713)627 (60 - 686)
definitionCHROMAT_FILE: MSMg01no494_h19.b1 PHD_FILE: MSMg01no494_h19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:19:20 2005CHROMAT_FILE: MSMg01no494_h19.g1 PHD_FILE: MSMg01no494_h19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:19:20 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(85,444,964 - 85,445,623)(85,602,286 - 85,602,912)
sequence
CGCTATACGACTCACTATTTTCAGAGGATGCGCGGAATTCTCATTGATAT
CTATACTAGGGATATATACCTAATTGCATATAATCAAACAGACTCAACTG
ACATTGGGGTGAGGGGGAATCGGGATCAGCTTCAGGATTCAGAAATAACC
ACAGTGAACATTTTTGGTGATAACCTATTTCCTATCTTATTTTTAAATAT
AGTGTATTATGCATAATTACACACATAATTTAATCATGTGAATATAATTA
GTGTATAATTTTAAATCAAATAAGTCTGTGTTTTGAAAATAAGAATTAAT
GTTTGTGTAAGGCATTCCATTACCAGGCTTTGTTCTAAGTGTCAATCGTT
GCAAAATGCATCCCCCAAACTAAGATCAGATACAATGAGACAGAATTTAT
GTCTCAAAAAAGCCCTGTGAGAAAATCCCGGTGAGATAGGAGCTGTATCT
TTCTCCCTTGCACAAGTGAGGAAGCTGAACCATGAGACTGTTCATTAACT
TTGTAAAGGCACATTGCTGGTATTGGACAGTCCCAGTGTGCTCGTCTTCA
TTTTCATGGAATTACATATTTACAAATCATCAATTTTTTAATGTATAAAA
TTTTAAGTATACTTTTAAGTATAGAATTCATATAGATGGATTTTCTTTTT
TTAAAACCTGCCCCCGTATCTATTGCAATTGTCAGAGAGGAAGGATGCAG
GAGGGGAAACTGANGCTAGGAGGCTGACAGGCCATAAGTCCCCCAACAAC
TTCAGGTG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXTTTACCAAACTATCCATTCACCATGAAGTGAAGTTGGGTAT
TTGCCTCACACTTCACAACAGACTCCCTTGCCAGCTGGCCACTGATACAC
ATCTCCTTCCACACCTAATTCCTCTGCTCTAGGACCACGCGCCTTGCATT
CCTGACTGGGGAGACAGGGGAGGGCAAGGACTCACAGGTGCAAACTGGGA
TGAGCCTTCCTTTGGGGGGCAGTGCTCCCCCCAGGTGTCTCAGCAGATAG
TGTGCTCCCCTGCTGGGTGAGCCCCATGTCTCTGCCAACCACTGTGTCAG
AGAGCTTTTGTCTCTACCCTGGGGAGGCCACAGTAGACACAGCTCTGTCT
CACATCTACTAGGTCACTCAGTGCTTGCTCTCTTTGCCACTGGCTCAGAC
TTTGTTTCTGCCTTTTCGCTCCTTTACTCCACACACGTCAGTCTGTATTT
AATTTAAAAAGTCATTGTTCTGGTTTTAGGAGAGACTGGAAATAGCTTCA
CGTGTTTAGTCCATCCTCTTACCCAGTGCTTTCATTTCACACTTTACAGT
GACAGCAAGACTAGACATCTAAAATGGCACTGATGAGCTGGGGTGTTGGC
ACCAGCCTGTGATCTCAGCAGCTGAGCAGTGGAGACATGAGAATCACGAC
TTCAAGGTTGTCATTGGCTACATAATGAGCTTGAGGTGGGCCTGGGTTAT
AAGAGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no494_h19.b1 MSMg01no494_h19.b1 CHROMAT_FILE:
MSMg01no494_h19.b1 PHD_FILE: MSMg01no494_h19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:19:20 2005
         (660 letters)



>mm_chr8_85444764_85445823
          Length = 1060

 Score = 1268 bits (656), Expect = 0.0
 Identities = 659/660 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tactagggatatatacctaattgcatataatcaaacagactcaactgacattggggtgag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tactagggatatatacctaattgcatataatcaaacagactcaactgacattggggtgag 260

                                                                       
Query: 61  ggggaatcgggatcagcttcaggattcagaaataaccacagtgaacatttttggtgataa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggggaatcgggatcagcttcaggattcagaaataaccacagtgaacatttttggtgataa 320

                                                                       
Query: 121 cctatttcctatcttatttttaaatatagtgtattatgcataattacacacataatttaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cctatttcctatcttatttttaaatatagtgtattatgcataattacacacataatttaa 380

                                                                       
Query: 181 tcatgtgaatataattagtgtataattttaaatcaaataagtctgtgttttgaaaataag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcatgtgaatataattagtgtataattttaaatcaaataagtctgtgttttgaaaataag 440

                                                                       
Query: 241 aattaatgtttgtgtaaggcattccattaccaggctttgttctaagtgtcaatcgttgca 300
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aattaatgtttgtggaaggcattccattaccaggctttgttctaagtgtcaatcgttgca 500

                                                                       
Query: 301 aaatgcatcccccaaactaagatcagatacaatgagacagaatttatgtctcaaaaaagc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aaatgcatcccccaaactaagatcagatacaatgagacagaatttatgtctcaaaaaagc 560

                                                                       
Query: 361 cctgtgagaaaatcccggtgagataggagctgtatctttctcccttgcacaagtgaggaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cctgtgagaaaatcccggtgagataggagctgtatctttctcccttgcacaagtgaggaa 620

                                                                       
Query: 421 gctgaaccatgagactgttcattaactttgtaaaggcacattgctggtattggacagtcc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gctgaaccatgagactgttcattaactttgtaaaggcacattgctggtattggacagtcc 680

                                                                       
Query: 481 cagtgtgctcgtcttcattttcatggaattacatatttacaaatcatcaattttttaatg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 cagtgtgctcgtcttcattttcatggaattacatatttacaaatcatcaattttttaatg 740

                                                                       
Query: 541 tataaaattttaagtatacttttaagtatagaattcatatagatggattttcttttttta 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tataaaattttaagtatacttttaagtatagaattcatatagatggattttcttttttta 800

                                                                       
Query: 601 aaacctgcccccgtatctattgcaattgtcagagaggaaggatgcaggaggggaaactga 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 aaacctgcccccgtatctattgcaattgtcagagaggaaggatgcaggaggggaaactga 860


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 660
Length of database: 1060
Length adjustment: 10
Effective length of query: 650
Effective length of database: 1050
Effective search space:   682500
Effective search space used:   682500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no494_h19.g1 MSMg01no494_h19.g1 CHROMAT_FILE:
MSMg01no494_h19.g1 PHD_FILE: MSMg01no494_h19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:19:20 2005
         (627 letters)



>mm_chr8_85602086_85603112
          Length = 1027

 Score = 1212 bits (627), Expect = 0.0
 Identities = 627/627 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttaccaaactatccattcaccatgaagtgaagttgggtatttgcctcacacttcacaac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 827 tttaccaaactatccattcaccatgaagtgaagttgggtatttgcctcacacttcacaac 768

                                                                       
Query: 61  agactcccttgccagctggccactgatacacatctccttccacacctaattcctctgctc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 767 agactcccttgccagctggccactgatacacatctccttccacacctaattcctctgctc 708

                                                                       
Query: 121 taggaccacgcgccttgcattcctgactggggagacaggggagggcaaggactcacaggt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 707 taggaccacgcgccttgcattcctgactggggagacaggggagggcaaggactcacaggt 648

                                                                       
Query: 181 gcaaactgggatgagccttcctttggggggcagtgctccccccaggtgtctcagcagata 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 647 gcaaactgggatgagccttcctttggggggcagtgctccccccaggtgtctcagcagata 588

                                                                       
Query: 241 gtgtgctcccctgctgggtgagccccatgtctctgccaaccactgtgtcagagagctttt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 587 gtgtgctcccctgctgggtgagccccatgtctctgccaaccactgtgtcagagagctttt 528

                                                                       
Query: 301 gtctctaccctggggaggccacagtagacacagctctgtctcacatctactaggtcactc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 527 gtctctaccctggggaggccacagtagacacagctctgtctcacatctactaggtcactc 468

                                                                       
Query: 361 agtgcttgctctctttgccactggctcagactttgtttctgccttttcgctcctttactc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 467 agtgcttgctctctttgccactggctcagactttgtttctgccttttcgctcctttactc 408

                                                                       
Query: 421 cacacacgtcagtctgtatttaatttaaaaagtcattgttctggttttaggagagactgg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 407 cacacacgtcagtctgtatttaatttaaaaagtcattgttctggttttaggagagactgg 348

                                                                       
Query: 481 aaatagcttcacgtgtttagtccatcctcttacccagtgctttcatttcacactttacag 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 347 aaatagcttcacgtgtttagtccatcctcttacccagtgctttcatttcacactttacag 288

                                                                       
Query: 541 tgacagcaagactagacatctaaaatggcactgatgagctggggtgttggcaccagcctg 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 287 tgacagcaagactagacatctaaaatggcactgatgagctggggtgttggcaccagcctg 228

                                      
Query: 601 tgatctcagcagctgagcagtggagac 627
           |||||||||||||||||||||||||||
Sbjct: 227 tgatctcagcagctgagcagtggagac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 627
Length of database: 1027
Length adjustment: 10
Effective length of query: 617
Effective length of database: 1017
Effective search space:   627489
Effective search space used:   627489
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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