BAC Information

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BAC

Clone NameMSMg01-496A03
Chromosome8 (Build37)
Map Location 5,996,976 - 5,997,335
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC436026, Slc10a2, LOC434275, LOC623409, LOC669429, LOC100040360
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-496A03.T7 (MSMg01no496_a03.b1)MSMg01-496A03.TJ (MSMg01no496_a03.g1)
ACCAG572917AG572918
length746735
length of high quality
(start - end)
683 (55 - 737)647 (82 - 728)
definitionCHROMAT_FILE: MSMg01no496_a03.b1 PHD_FILE: MSMg01no496_a03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:21:11 2005CHROMAT_FILE: MSMg01no496_a03.g1 PHD_FILE: MSMg01no496_a03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:21:12 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNTTTTTGTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXCGCGGAATTCACGAAATGAAAAGATCTGCTAAGTGTTGCAAGGAGA
ACCAATGCAAGAACAATATTTACTGTCAGTTGTGTTCTACTTATAGTCTT
TCCAAGCACCATGTGTCCTCTCAAGTGTCTGCTTCAGCAAAATATTCTTT
CATAAAACAGCAAACAGAAAAACATCACAAGACACAACTGAGTCTTTAAA
GAAACGAGAGATTTCCAATTCAGAGTAGTGTCAATATGAAAGGCTGATCT
GAAATGTTTGTGTCTAGACTTCGGCTTTGAATTCTTTTTCTTAATCTAGT
TCAGTCGTTCTCTACCTTCCTAATGCTAAAACACTTTCATAAAGTTCCTC
GTGTATTGTTACCACCAACCATAAAATTATTTTTGTTGTTACTTCATAAC
TGTAATTTTGCTATAGTTATTTATCATAACGTAAATATCTGTGTTTTTAA
TAGTCTGAAGTGACCCTTGTAAAAGGGTCATTTGACCCCCAAATGGATTG
CAACCTACATGTTTAACCTCTGTTCTAGATGAAAGTTTTGGGTTAATAAT
TGAAAAAATACTACATTTAAAGTTAGGTTAAAAACAGAAAGAAAGAATAG
TAAAAAAAGGAAGATGGATGAAAGGAGGTTTTATATAATAAGCACTTCCT
ATTTTTTTGTAGCAGAGGAGACTTAAGTGAAAAATGAGAAAGCCAA
NAAGGATCGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTGATCTTTCCAAAACTTT
TATCATGAATGGGTGTTGGATCTTGTCAAATGCTTTTTCTGCATCTAACG
AGATGATCATGTGGTTTTTGTCTTTGAGTTTGTTTATATAATGGATTACA
TTGATGGATTTTCGTATATTAAACCATCCCTGCATCCCTGGAATAAAACC
TACTTGTTCAGGATGGATGATTGCTTTAATGTGTTCTTGGATTCGGTTAG
CGAGAATTTTATTGAGGATTTTTGTATCGATATTCATAAGAGAAATTGGT
CTGAAGTTCTCTATCTTTGTTGGATCTTTCTGTGGTTTAGGTATCAGAGT
AATAGTGGCTTCATAAAATGAGTTGGGTAGAGTACCTTCTACTTCTATTT
TGTGAAATAGTTTGTGCAGAATTGGAATTAGATCTTCTTTGAAGGTCTGA
TAGAACTCTGCACTAAACCCATCTGGTCCTGGGCTTTTTTTGGTTGGGAG
ACTATTAATAACTGCTTCTATTTCTTTAGGTGATATGGGACTGTTTAGAT
GGTCAACTTGATCCTGATTCAACTTTGGTACCTGGTATCTGTTCAGAAAT
TTGTCCATTTCGTCCAGGTTTTCCAGTTTTGTTGAGTATAGCCTTTTGTA
GAAGGATCTGATGGTGTTTTGGATTTCTTCAGGAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no496_a03.b1 MSMg01no496_a03.b1 CHROMAT_FILE:
MSMg01no496_a03.b1 PHD_FILE: MSMg01no496_a03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:21:11 2005
         (683 letters)



>mm_chr8_5996258_5997342
          Length = 1085

 Score =  623 bits (322), Expect = 0.0
 Identities = 350/360 (97%), Gaps = 2/360 (0%)
 Strand = Plus / Minus

                                                                        
Query: 326  aacactttcataaagttcctcgtgtattgttaccaccaaccataaaattatttttgttgt 385
            ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 1078 aacactttcataaagttcctcgtgtatggttaccaccaaccataaaattatttttgttgt 1019

                                                                        
Query: 386  tacttcataactgtaattttgctatagttatttatcataacgtaaatatctgtgttttta 445
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1018 tacttcataactgtaattttgctatagttatttatcataacgtaaatatctgtgttttta 959

                                                                        
Query: 446  atagtctgaagtgacccttgtaaaagggtcatttgacccccaaatggattgcaacctaca 505
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 958  atagtctgaagtgacccttgtaaaagggtcatttgacccccaaatggattgcaacctaca 899

                                                                        
Query: 506  tgtttaacctctgttctagatgaaagttttgggttaataattgaaaaaatactacattta 565
            | ||||||| ||||||||| ||||||||||||||||||||||||| ||||||||||||||
Sbjct: 898  tatttaaccgctgttctagctgaaagttttgggttaataattgaagaaatactacattta 839

                                                                        
Query: 566  aagttaggttaaaaacagaaagaaagaatagt--aaaaaaaggaagatggatgaaaggag 623
            ||||||||||||||||||||||||||||||||  |||||||||||||||||| |||||||
Sbjct: 838  aagttaggttaaaaacagaaagaaagaatagtaaaaaaaaaggaagatggataaaaggag 779

                                                                        
Query: 624  gttttatataataagcacttcctatttttttgtagcagaggagacttaagtgaaaaatga 683
            ||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||
Sbjct: 778  gttttatataataagcactccctatttttttgtagcagaggagagttaagtgaaaaatga 719


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 683
Length of database: 1085
Length adjustment: 10
Effective length of query: 673
Effective length of database: 1075
Effective search space:   723475
Effective search space used:   723475
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)