Query= MSMg01no496_p23.b1 MSMg01no496_p23.b1 CHROMAT_FILE:
MSMg01no496_p23.b1 PHD_FILE: MSMg01no496_p23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:22:31 2005
(550 letters)
>mm_chr8_58432578_58433527
Length = 950
Score = 909 bits (470), Expect = 0.0
Identities = 519/552 (94%), Gaps = 29/552 (5%)
Strand = Plus / Plus
Query: 3 ggaattcttagac---tctggttgtatctggaggatatcatcctgagtgaggtaacccaa 59
||||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 ggaattcttagacaaat--ggttgtatctggaggatatcatcctgagtgaggtaacccaa 259
Query: 60 tcacaaaagaacacacatgatatgcactcactggtaagtggatattagctcagaagctca 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 tcacaaaagaacacacatgatatgcactcactggtaagtggatattagctcagaagctca 319
Query: 120 tgtaaatgaagaaaatatctaataaaaatcaaaatcaaacaaatttaaaaagaggtgttt 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 tgtaaatgaagaaaatatctaataaaaatcaaaatcaaacaaatttaaaaagaggtgttt 379
Query: 180 gaaatgtgagttcattacaataaaattaaaatcatattgttgttgctattgttcttgatc 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 gaaatgtgagttcattacaataaaattaaaatcatattgttgttgctattgttcttgatc 439
Query: 240 ttgttcttgtttaagacaggttttctctgaatagccctaactctcctggaacttgctctg 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 ttgttcttgtttaagacaggttttctctgaatagccctaactctcctggaacttgctctg 499
Query: 300 tatagcaggctggcctcaaatgcacagagatcctcctgcctctgcctcttgagtgctcct 359
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 500 tatagcaggctggcctcaaatgctcagagatcctcctgcctctgcctcttgagtgct--- 556
Query: 360 gcctctgcctcttgagtgctgggattaaaggcgtgcgctaccattacttggctcaaatta 419
||||||||||||||| ||||||||||||||||||||||||
Sbjct: 557 --------------------gggattaaaggcgtgtgctaccattacttggctcaaatta 596
Query: 420 taagttttgataattttttt-ctactggaaaatgtgatacccagtttcacacttcttact 478
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 597 taagttttgataattttttttctactggaaaatgtgatacccagtttcacacttcttact 656
Query: 479 ttctttacactactttatgtatgggcactgaagcaggaaattctggcctatatattcact 538
|||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 657 ttctttacacaactttatgtatggacactgaagcaggaaattctggcctatatattcact 716
Query: 539 aataatcttgag 550
||||||||||||
Sbjct: 717 aataatcttgag 728
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 550
Length of database: 950
Length adjustment: 10
Effective length of query: 540
Effective length of database: 940
Effective search space: 507600
Effective search space used: 507600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no496_p23.g1 MSMg01no496_p23.g1 CHROMAT_FILE:
MSMg01no496_p23.g1 PHD_FILE: MSMg01no496_p23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:22:31 2005
(589 letters)
>mm_chr8_58591854_58592842
Length = 989
Score = 862 bits (446), Expect = 0.0
Identities = 464/474 (97%), Gaps = 8/474 (1%)
Strand = Plus / Minus
Query: 120 ttttgttttatttgtttgtttttatagaacctgtacccccagcccagggatgacaccact 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 989 ttttgttttatttgtttgtttttatagaacctgtacccccagcccagggatgacaccact 930
Query: 180 ctaaatggcttaggccctccactgtcaatcactagttagaaaaatgccctacagcagggt 239
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 929 caaaatggcttaggccctccactgtcaatcactagttagaaaaatgccctacagcagggt 870
Query: 240 cttacgg----atttttttctcagttgaggttacccactttcagatcactcaagcttgtg 295
||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 869 cttacggaggca----tttctcagttgaggttacccactttcagatcactcaagcttgtg 814
Query: 296 tcaagctgacataaagctagccaggggagtactttaaagtaatactgggtaaagatagta 355
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 813 tcaagctgacataaagctagccaggggagtactttaaagtaatactgggtaaagatagta 754
Query: 356 tatgcgaaagttgagatggcaaaagtgttcatttaatattattccatttgctagattctt 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 753 tatgcgaaagttgagatggcaaaagtgttcatttaatattattccatttgctagattctt 694
Query: 416 aactggtatgcccagcgaaattatcttgtaagctactttaaaaatataatttacccctaa 475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 693 aactggtatgcccagcgaaattatcttgtaagctactttaaaaatataatttacccctaa 634
Query: 476 actttcagtttagcaaactagactatttgtattgtaatttcacggactaagatcttggct 535
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 633 actttcagtttagcaaactagactatttgtattgtaatttcacggactaagatcttggct 574
Query: 536 ttggtacatttagaaattacctatggaccaatattctagatttccttcctagaa 589
||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 573 ttggtacatttagaaatcacctatggaccaatattctagatttccttcctagaa 520
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 589
Length of database: 989
Length adjustment: 10
Effective length of query: 579
Effective length of database: 979
Effective search space: 566841
Effective search space used: 566841
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
