Query= MSMg01no497_e02.b1 MSMg01no497_e02.b1 CHROMAT_FILE:
MSMg01no497_e02.b1 PHD_FILE: MSMg01no497_e02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:22:52 2005
(695 letters)
>mm_chr8_111223844_111224940
Length = 1097
Score = 1305 bits (675), Expect = 0.0
Identities = 688/693 (99%), Gaps = 2/693 (0%)
Strand = Plus / Minus
Query: 5 gaattcattctattgcgaagtacccatcttgtgtgattcaataatgcttagatgataatc 64
||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 897 gaattcattctatggagaagtacccatcttgtgtgattcaataatgcttagatgataatc 838
Query: 65 cagcatctatatggattattttatatacaaaatgggggctgcctaaaatccagaatctaa 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 837 cagcatctatatggattattttatatacaaaatgggggctgcctaaaatccagaatctaa 778
Query: 125 atcctttatttagcaggaaagaaggcagaaaattttagaccaacctgttttttaaggcat 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 777 atcctttatttagcaggaaagaaggcagaaaattttagaccaacctgttttttaaggcat 718
Query: 185 ttttactgtggggagggaaagtgacatgtaggctaagtactgcattgctatttttctgc- 243
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 717 ttttactgtggggagggaaagtggcatgtaggctaagtactgcattgctatttttctgcc 658
Query: 244 -ctctctgaaatgaatgactatagataacaaaggtatatgcataaaacggtacataaata 302
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 657 tctctctgaaatgaatgactatagataacaaaggtatatgcataaaacggtacataaata 598
Query: 303 tacatttgaatgacttcacaagccttgtcatctatgtgtgaatatctgtgcacacaaata 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 597 tacatttgaatgacttcacaagccttgtcatctatgtgtgaatatctgtgcacacaaata 538
Query: 363 gacaaggtgtgcacaaatgcaggtactgtacagagctattagggggctttttctcactgg 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 537 gacaaggtgtgcacaaatgcaggtactgtacagagctattagggggctttttctcactgg 478
Query: 423 gggatttatgtttccgggtctgtttgaagccatttctttggaaatataacatagcagtgt 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 477 gggatttatgtttccgggtctgtttgaagccatttctttggaaatataacatagcagtgt 418
Query: 483 tgttttaatgaagtagatggagatgctgaatttgtgtatgaatctgttcctccacagttt 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 417 tgttttaatgaagtagatggagatgctgaatttgtgtatgaatctgttcctccacagttt 358
Query: 543 tcagaatatggaactgcagctattatttggtccaaggggtaaatatgcaatgggccaatg 602
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 tcagaatatggaactgcagctattatttggtccaaggggtaaatatgcaatgggccaatg 298
Query: 603 tcaggaggaaagagatggggtgctagtatatttctcttagaaagagccaagctttgggcc 662
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 297 tcaggaggaaagagatggggtgctagtatatttctcttagaaagagccaagctttgggcc 238
Query: 663 ctaggaatcccctcaacggggtgactggggaca 695
|||||||||||||||||||||||||||||||||
Sbjct: 237 ctaggaatcccctcaacggggtgactggggaca 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 695
Length of database: 1097
Length adjustment: 10
Effective length of query: 685
Effective length of database: 1087
Effective search space: 744595
Effective search space used: 744595
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no497_e02.g1 MSMg01no497_e02.g1 CHROMAT_FILE:
MSMg01no497_e02.g1 PHD_FILE: MSMg01no497_e02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:22:52 2005
(666 letters)
>mm_chr8_111041458_111042523
Length = 1066
Score = 1255 bits (649), Expect = 0.0
Identities = 661/665 (99%)
Strand = Plus / Plus
Query: 1 atctttcctaatattcatcttggcagcatgaaagttgccactagccgttccaaggaatgt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atctttcctaatattcatcttggcagcatgaaagttgccactagccgttccaaggaatgt 260
Query: 61 aaaagtgatcgcatggcttcaatttcattttagctgttataatcctatgtagaacacaat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaaagtgatcgcatggcttcaatttcattttagctgttataatcctatgtagaacacaat 320
Query: 121 gtgaatgcatcctagtttctacccatgtgagtgggcataccagacatgaaaggcaagaaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtgaatgcatcctagtttctacccatgtgagtgggcataccagacatgaaaggcaagaaa 380
Query: 181 tccagccaatggaatagtgtggtgactgcaaagggcactatggttagttgttacttgtga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tccagccaatggaatagtgtggtgactgcaaagggcactatggttagttgttacttgtga 440
Query: 241 atcctgactctcggtttgtccttggctgggagacattgtgacaagaacacaacctctcaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atcctgactctcggtttgtccttggctgggagacattgtgacaagaacacaacctctcaa 500
Query: 301 ttccttcgccaacaaaatcaaaaggttgaagggaactattttccatgtatttgcttgagc 360
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttccttcgccagcaaaatcaaaaggttgaagggaactattttccatgtatttgcttgagc 560
Query: 361 tttaatgtaattcacctgtgtgagaattgaaaaagaaagccttgatttccaaagtgtgat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tttaatgtaattcacctgtgtgagaattgaaaaagaaagccttgatttccaaagtgtgat 620
Query: 421 agacagccccaacctacactctccatcactggagggcttgctataaatgccattctccaa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 agacagccccaacctacactctccatcactggagggcttgctataaatgccattctccaa 680
Query: 481 cccttgtcccacattcccccagttgagatctatgaggttaaagaagtctgccatctggca 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 cccttgtcccacattcccccagttgagatctatgaggttaaagaagtctgccatctggca 740
Query: 541 cactgccgggtggttgagcaatgcaatggtgtgcaaaggaaccacgagcatgctgttgtg 600
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 cactgccgggtggttgagcgatgcaatggtgtgcaaaggaaccacgagcatgctgttgtg 800
Query: 601 tttgcaccacatgagttcggcgtgcaccttgcagctgcaatgagcctggctcaactttgc 660
||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 tttgcaccacatgagctcagcgtgcaccttgcagctgcaatgagcctggctcaactttgc 860
Query: 661 atttc 665
|||||
Sbjct: 861 atttc 865
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 666
Length of database: 1066
Length adjustment: 10
Effective length of query: 656
Effective length of database: 1056
Effective search space: 692736
Effective search space used: 692736
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
