Query= MSMg01no497_f11.b1 MSMg01no497_f11.b1 CHROMAT_FILE:
MSMg01no497_f11.b1 PHD_FILE: MSMg01no497_f11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:22:59 2005
(591 letters)
>mm_chr8_114468247_114469242
Length = 996
Score = 1073 bits (555), Expect = 0.0
Identities = 583/595 (97%), Gaps = 7/595 (1%)
Strand = Plus / Minus
Query: 4 ggaattctttaattcccaatcaaactaagagctctgtgtgtgtgtatgcgta--tgtgtg 61
||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||
Sbjct: 596 ggaattctttaattcccaatcaaactaagagctgtgtgtgtgtgtatgcgtatgtgtgtg 537
Query: 62 catgtggtccagtatg---ccacatctggcatcttttgtagttctcagtgaatcttgttc 118
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 536 catgtggtccagtatgccaccacatctggcatcttttgtagttctcagtgaatcttgttc 477
Query: 119 ctacaaactaggctagccccctagctagtttaggtcactaaattagatgtaacaaggaat 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 476 ctacaaactaggctagccccctagctagtttaggtcactaaattagatgtaacaaggaat 417
Query: 179 ccccactggggagacacatgaaagctgaaatatgactcagggttttaaatgcccagtcat 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 416 ccccactggggagacacatgaaagctgaaatatgactcagggttttaaatgcccagtcat 357
Query: 239 taatgggaaaggagtaaccaagtctcagccaagctagtcgattttccttccccaggggag 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 taatgggaaaggagtaaccaagtctcagccaagctagtcgattttccttccccaggggag 297
Query: 299 ctaaaaacaggctgtgagctacatggcccctgcctaaattctggtccctggtagagagaa 358
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 296 ttaaaaacaggctgtgagctacatggcccctgcctaaattctggtccctggtagagagaa 237
Query: 359 aaggaaacagtttaaatgaatcaatgagacccagggctggagagatggctcaggggttaa 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 236 aaggaaacagtttaaatgaatcaatgagacccagggctggagagatggctcaggggttaa 177
Query: 419 gaacacagattgctcttccagaggtcctgagttcaattcccagtaatcacatggtggctc 478
|||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct: 176 gaacacagattgctcttccagaagtcctgagttcaattcccagcaatcacatggtggctc 117
Query: 479 acaaccatctgtaatgagatctaatgccctcttatggtgtatctgaagacagctacagtg 538
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 116 acaaccatctgtaatgagatctaatgccctcttatggtgtatctgaagacacctacagtg 57
Query: 539 tactcatacagataaaataaataaatctgt--aaaaaaaaaaaatagatgagacc 591
|||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 56 tactcatacagataaaataaataaatctgtaaaaaaaaaaaaaatagatgagacc 2
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 591
Length of database: 996
Length adjustment: 10
Effective length of query: 581
Effective length of database: 986
Effective search space: 572866
Effective search space used: 572866
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no497_f11.g1 MSMg01no497_f11.g1 CHROMAT_FILE:
MSMg01no497_f11.g1 PHD_FILE: MSMg01no497_f11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:23:00 2005
(610 letters)
>mm_chr8_114456432_114457441
Length = 1010
Score = 1133 bits (586), Expect = 0.0
Identities = 604/610 (99%)
Strand = Plus / Plus
Query: 1 aaccaatcaccgcttgccccgccctaccccgcatcaagtctgcataaaaacactggtact 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaccaatcaccgcttgccccgccctaccccgcatcaagtctgcataaaaacactggtact 260
Query: 61 ttctgtctttacagcgtggtgatgttcaaactcagcagcttactggggtgtacagaactc 120
||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 261 ttctgtctttacagcttggtgatgttcaaactcagcagcgtactggggtgtacagaactc 320
Query: 121 cgcctacaagccctcaaaggggttttttcttcagccacctttccattcagaaaatgacca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cgcctacaagccctcaaaggggttttttcttcagccacctttccattcagaaaatgacca 380
Query: 181 gcaccagaaacaggctctggactcttgttgtccggcaaacacagtgcctgcacggctgcc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gcaccagaaacaggctctggactcttgttgtccggcaaacacagtgcctgcacggctgcc 440
Query: 241 tttctagggacacctggagaaactgaataaaactatctagaaagttaagcatgcgcaggc 300
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tttctagggaaacctggagaaactgaataaaactatctagaaagttaagcatgcgcaggc 500
Query: 301 caaagggacttttgtttccaaccctcgtggctccttaagatccaagctgtgggactgaga 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 caaagggacttttgtttccaaccctcgtggctccttaagatccaagctgtgggactgaga 560
Query: 361 gtggctcagtggttaagtccttgcatgcaagcacaaagccttgggtttgattcccagcac 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gtggctcagtggttaagtccttgcatgcaagcacaaagccttgggtttgattcccagcac 620
Query: 421 cccatataccccagcagggcgttgcatagcaaatccctggcactgggaaggtgaaggccg 480
|||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||
Sbjct: 621 cccatataccccagcagggcgttgcatagcgaatccccggcactgggaaggtgaaggccg 680
Query: 481 agtatcagttgttgaaagacgaccttggctatatagtttaaggcaagcctgggatacacg 540
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 681 agtatcagttgttgaaagacgactttggctatatagtttaaggcaagcctgggatacacg 740
Query: 541 agactctgctctcacacccggtcaaatgacccaaactgggatctcactccatcctatcac 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 agactctgctctcacacccggtcaaatgacccaaactgggatctcactccatcctatcac 800
Query: 601 ccccaggatc 610
||||||||||
Sbjct: 801 ccccaggatc 810
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 610
Length of database: 1010
Length adjustment: 10
Effective length of query: 600
Effective length of database: 1000
Effective search space: 600000
Effective search space used: 600000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
