BAC Information

Click to search

BAC

Clone NameMSMg01-497P04
Chromosome8 (Build37)
Map Location 47,851,476 - 47,852,033
singlet/doubletsinglet
Overlap geneIrf2
Upstream geneSorbs2, Pdlim3, Ccdc110, 1700029J07Rik, 1810047C23Rik, Ankrd37, Lrp2bp, Snx25, 4933411K20Rik, Slc25a4, LOC621269, LOC100039875, LOC667325, Helt, LOC667337, Acsl1, Mlf1ip, Ccdc111, Casp3
Downstream geneEnpp6, Stox2, 4930448N21Rik, D030016E14Rik, Rwdd4a, LOC384819, LOC667422, Ing2, LOC546058, Cdkn2aip
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-497P04.T7 (MSMg01no497_p04.b1)MSMg01-497P04.TJ (MSMg01no497_p04.g1)
ACCAG574393AG574394
length762750
length of high quality
(start - end)
576 (80 - 655)229 (79 - 307)
definitionCHROMAT_FILE: MSMg01no497_p04.b1 PHD_FILE: MSMg01no497_p04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:23:48 2005CHROMAT_FILE: MSMg01no497_p04.g1 PHD_FILE: MSMg01no497_p04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:23:48 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CATCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAATGCCATAACAGGCG
CGGAATTCCACATTGTGCCAGAAAAAAAAGTAAAAGAGACTTCAAAGCCT
GCCCCCACAGTGACACACTTCCTCTAATAAGGCCACACATACTCCAACAA
ATCCACACCTCCTAATAGTGCCACTCCCCATGGGCCAAGCATTCACACAC
ATGAGTCTGTGGAGGCCATACTTACTCAAAGCACCAGACACAGCCACACT
CACATATACACACACACACACACACACACACACACACACCAGGCAAACAA
ACAAGTAAACGTAAATGTTTTATTCTAATTGTTATCATAAAGGCAATCTA
TAATATAGTTGGGTGCTATGTGTGACAAACTAGATGGGGTTTATTATTTG
TTTCTGTATACATTTGGAGGAGATCTATATCACGTCTGGAAACTGGAATC
GATGCTTCTACTGGGGTAAGTCTCACCACCATGCAAGTGCCGTGGAGTGA
CGCTAAAACTAAACATGGGTAGCAGGATGAGTAAGCCGTAAAGCATTTCT
TTAGAAGCCTGGAGAGCTTTCTGGACACATGGCTTTTATCATTCAGTTCT
GATGGAAAGAAGGATATCACAGCACTGTGGAATGAATGGGACCCATGCAA
GCACTTACGTTCTGTGGCCTCCCTGAACACACACCGCACGGGGTGGGAGA
AGAACAGTAACACCAGAGAGTCAAGGGGAAAGCCTTCAAGACTCCTGAAA
AGGCTCAAGTGC
NCCGATGCTAGGGGAGGTCGGGCGGNNGCCCCGATGGNTACTTGANGCGA
CCNANCCCCGTTTTNGTCTATTGCCCCGCCGAAACAAAGCCAGNAAGAAA
TATGTATACACACATATTAATATAAATATATATATGTATATGTGTATATG
TATATATGTGTATGTATGCATATGTATATATACACACACATACACACGTG
TGTATATATATATATATATATATATATACATGCATATGTATATTTGGTAT
TTTTCATGCATGTATAGNTGCATATAATATATATGCATATATATAGTAAC
TTTACCCGCACATGTTTTTTTTTTTACCNANANAAGNGAAAAACACACNA
GGAGAGGGGTTTTATGGAAGCGCCGNATACAAGTGCTGGGACTGGAGGGT
CTGAAATCTGTAGGGCACCCCCATGAGCCTTAAACTCTAAGTTAGTGGTT
TTCAATGGCCTAATGCTGTGGTTTTTAATGCCCTAATGCTGTGACCCCTT
AATTACAGTTCCTCTTGTTATGGAGACCCCCAAACACAAAGTTGCTTCCA
TTGTTACTTTATAACTGTAATTTTGCTACTGTTATGGATCATAATGGAAA
TATCTGATATGCCCGATGTGTGACCCTGTGAAACGGAAGTTGTGTTTATG
TATCACAGGTTGAGAACCCCTGCTCCAAGGTAAGAGCTGATGTTGGACTC
CGGAGGCGGGATTTCTTTCTCTACAGGGAAGCCCCGGCTTACATTCCTGT

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no497_p04.b1 MSMg01no497_p04.b1 CHROMAT_FILE:
MSMg01no497_p04.b1 PHD_FILE: MSMg01no497_p04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:23:48 2005
         (576 letters)



>mm_chr8_47851066_47852041
          Length = 976

 Score = 1017 bits (526), Expect = 0.0
 Identities = 555/576 (96%), Gaps = 18/576 (3%)
 Strand = Plus / Minus

                                                                       
Query: 1   gtaaaagagacttcaaagcctgcccccacagtgacacacttcctctaataaggccacaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 968 gtaaaagagacttcaaagcctgcccccacagtgacacacttcctctaataaggccacaca 909

                                                                       
Query: 61  tactccaacaaatccacacctcctaatagtgccactccccatgggccaagcattcacaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 908 tactccaacaaatccacacctcctaatagtgccactccccatgggccaagcattcacaca 849

                                                                       
Query: 121 catgagtctgtggaggccatacttactcaaagcaccagacacagccacactcacatatac 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||         
Sbjct: 848 catgagtctgtggaggccatacttactcaaagcaccagacacagccacact--------- 798

                                                                       
Query: 181 acacacacacacacacacacacacacacaccaggcaaacaaacaagtaaacgtaaatgtt 240
                    |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 797 ---------cacacacacacacacacacaccaggcaaacaaacaagtaaacgtaaatgtt 747

                                                                       
Query: 241 ttattctaattgttatcataaaggcaatctataatatagttgggtgctatgtgtgacaaa 300
           |||||| ||  |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 746 ttattccaaaagttatcataaaggcaatctataatatagttgggtgctatgtgtgacaaa 687

                                                                       
Query: 301 ctagatggggtttattatttgtttctgtatacatttggaggagatctatatcacgtctgg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 686 ctagatggggtttattatttgtttctgtatacatttggaggagatctatatcacgtctgg 627

                                                                       
Query: 361 aaactggaatcgatgcttctactggggtaagtctcaccaccatgcaagtgccgtggagtg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 aaactggaatcgatgcttctactggggtaagtctcaccaccatgcaagtgccgtggagtg 567

                                                                       
Query: 421 acgctaaaactaaacatgggtagcaggatgagtaagccgtaaagcatttctttagaagcc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 acgctaaaactaaacatgggtagcaggatgagtaagccgtaaagcatttctttagaagcc 507

                                                                       
Query: 481 tggagagctttctggacacatggcttttatcattcagttctgatggaaagaaggatatca 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 tggagagctttctggacacatggcttttatcattcagttctgatggaaagaaggatatca 447

                                               
Query: 541 cagcactgtggaatgaatgggacccatgcaagcact 576
           ||||||||||||||||||||||||||||||||||||
Sbjct: 446 cagcactgtggaatgaatgggacccatgcaagcact 411



 Score = 66.5 bits (34), Expect = 5e-15
 Identities = 37/38 (97%)
 Strand = Plus / Plus

                                                 
Query: 172 cacatatacacacacacacacacacacacacacacaca 209
           |||||| |||||||||||||||||||||||||||||||
Sbjct: 204 cacatacacacacacacacacacacacacacacacaca 241



 Score = 66.5 bits (34), Expect = 5e-15
 Identities = 34/34 (100%)
 Strand = Plus / Plus

                                             
Query: 177 atacacacacacacacacacacacacacacacac 210
           ||||||||||||||||||||||||||||||||||
Sbjct: 207 atacacacacacacacacacacacacacacacac 240


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 79
Number of extensions: 7
Number of successful extensions: 7
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 3
Length of query: 576
Length of database: 976
Length adjustment: 10
Effective length of query: 566
Effective length of database: 966
Effective search space:   546756
Effective search space used:   546756
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)