Query= MSMg01no498_i22.b1 MSMg01no498_i22.b1 CHROMAT_FILE:
MSMg01no498_i22.b1 PHD_FILE: MSMg01no498_i22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:24:39 2005
(519 letters)
>mm_chr8_63880453_63881372
Length = 920
Score = 949 bits (491), Expect = 0.0
Identities = 512/521 (98%), Gaps = 5/521 (0%)
Strand = Plus / Plus
Query: 4 ggaattcattatcttgtttctggggctcaaaagtgctgggattaaaggtcatgacctaac 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcattatcttgtttctggggctcaaaagtgctgggattaaaggtcatgacctaac 263
Query: 64 tacagtattatatgtatattttacatacttatatatgtaaaatattggaaacaatctgat 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tacagtattatatgtatattttacatacttatatatgtaaaatattggaaacaatctgat 323
Query: 124 tttccctaatttaaaaaaaaa-ttgttaagtgtgtccttcttatgtttgagatacctgat 182
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tttccctaatttaaaaaaaaaattgttaagtgtgtccttcttatgtttgagatacctgat 383
Query: 183 accccacgtggctgtggaggctttaatgtggctacccagactgcagaactctataccttt 242
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 384 accccacgtggctgtggaggctttaatgtggctacccagactgcagaaccctataccttt 443
Query: 243 tttgtttgtttgttt----tgttttgtttttcgagacagggtttctctgtgtagccctgg 298
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tttgtttgtttgtttgttttgttttgtttttcgagacagggtttctctgtgtagccctgg 503
Query: 299 ctgtcctggaactcactctgtagaccaggttggccttgaactcagaaattcacctgcctc 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 ctgtcctggaactcactctgtagaccaggttggccttgaactcagaaattcacctgcctc 563
Query: 359 tgcctcccaagtgctgggattaaaagaaccctattcctaattagactttatttaactaat 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 tgcctcccaagtgctgggattaaaagaaccctattcctaattagactttatttaactaat 623
Query: 419 tcatatttaaatagccacagtgggaatagctgcggaattagacaagtgcaatttttatga 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 624 tcatatttaaatagccacagtgggaatagctgcggaattagacaagtgcaattttaatga 683
Query: 479 atacagctatttgtgtctgattgtgggggtcagggggctgc 519
||||||||| |||||||||||| ||||||||||||||||||
Sbjct: 684 atacagctacttgtgtctgattatgggggtcagggggctgc 724
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 519
Length of database: 920
Length adjustment: 10
Effective length of query: 509
Effective length of database: 910
Effective search space: 463190
Effective search space used: 463190
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no498_i22.g1 MSMg01no498_i22.g1 CHROMAT_FILE:
MSMg01no498_i22.g1 PHD_FILE: MSMg01no498_i22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:24:39 2005
(450 letters)
>mm_chr8_64030396_64031244
Length = 849
Score = 731 bits (378), Expect = 0.0
Identities = 443/488 (90%), Gaps = 40/488 (8%)
Strand = Plus / Minus
Query: 1 catgggagtggcgaggctcattgggctgctttttaaaagactcaaattaagttcagtagg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 579 catgggagtggcgaggctcattgggctgctttttaaaagactcaaattaagttcagtagg 520
Query: 61 atcccacaaagccctttgttactaaaaatctttgatgccttgcacagattaggaatcgag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 519 atcccacaaagccctttgttactaaaaatctttgatgccttgcacagattaggaatcgag 460
Query: 121 agccctcctctctctgttgctttcagttattgagaaaatactttgcttttaggtggatga 180
|||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||
Sbjct: 459 agccctcctctctctgttgctttcagttattgagaaaatactttgccttta-gtggatga 401
Query: 181 aagtgtggctaattatcaaaggctcgggaggacattagaatgtgtgatgtctctacagct 240
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 400 aagtgtggctaattatcaaaggctcgggaggacatcagaatgtgtgatgtctctacagct 341
Query: 241 aatggcacctgatgacaaaccttcagcttcttcgcctgttttattcttgttcttgctttg 300
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 340 aatggcacctgatgacaaaccttcagcttcttcgtctgttttattcttgttcttgctttg 281
Query: 301 agtttatcgaaccttcgtctttgaagattaaatgcctgaggatgaaaacaaacaaacaaa 360
||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 280 agtttatcgaatcttcgtctttgaaaattaaatgcctgaggatgaaaacaaacaaacaaa 221
Query: 361 caaaagccctttggcatttttct----------------tgtgtgtgtgtgtgtgtgt-- 402
|||||||||||||||| |||||| |||||||||||||||||||
Sbjct: 220 caaaagccctttggca-ttttcttgcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgc 162
Query: 403 ----------------gcaagatccaa----tgtatgtatgtggaatgtatgtgtgtatg 442
||||||||||| |||||||||||||||||||||||||||||
Sbjct: 161 atgcgtgcgcacgcgcgcaagatccaatgtgtgtatgtatgtggaatgtatgtgtgtatg 102
Query: 443 tgtagact 450
||||||||
Sbjct: 101 tgtagact 94
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 450
Length of database: 849
Length adjustment: 10
Effective length of query: 440
Effective length of database: 839
Effective search space: 369160
Effective search space used: 369160
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
