Query= MSMg01no498_l06.b1 MSMg01no498_l06.b1 CHROMAT_FILE:
MSMg01no498_l06.b1 PHD_FILE: MSMg01no498_l06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:24:51 2005
(643 letters)
>mm_chr8_54465330_54466374
Length = 1045
Score = 1154 bits (597), Expect = 0.0
Identities = 615/621 (99%), Gaps = 2/621 (0%)
Strand = Plus / Minus
Query: 25 ccatagcatctcaaatgccccacctctgagcactgttgtactgaggagcaagggttcaat 84
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 845 ccatagcatctcaaatgccccacctctgagcactgttgtactgaggagcaagggttcaat 786
Query: 85 gctttgtcctttggaagacaattatgatccataaaaattcatcacaatggctaatatctg 144
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 785 gctttgtcctttggaagacaattatgacccataaaaattcatcacaatggctaatatctg 726
Query: 145 taatgtgaatactcccagtacaactaatatcaagctcagattgggttcacaagcagctta 204
|||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||
Sbjct: 725 taatgtgaatactcccagtacaactaatatcaagctcagattggattcacaagctgctta 666
Query: 205 taaacttctaaaaattggttattggcttctcctggtcagtctaatggttccaacagccaa 264
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 665 taaacttctaaaaattggttattggcttctcctggtcagtctaatggttccaacagccaa 606
Query: 265 tgtctctttgttaatataacatacaacaaatgtgttcaaatttgtgggaataggaatgac 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 tgtctctttgttaatataacatacaacaaatgtgttcaaatttgtgggaataggaatgac 546
Query: 325 ttaaggattctagaaaaataaggacattagtgaagtattaatgatctgacttatgtatct 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 ttaaggattctagaaaaataaggacattagtgaagtattaatgatctgacttatgtatct 486
Query: 385 actccagatattcctacatgagattttccagtatggagatctatctcaacttttacccaa 444
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 485 actccagatattcctacatgagattttccagtacggagatctatctcaacttttacccaa 426
Query: 445 atacagttatcaccaaaggtagtaagtagcaagaatacttgactgtaattctcttttatt 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 atacagttatcaccaaaggtagtaagtagcaagaatacttgactgtaattctcttttatt 366
Query: 505 tgaagcctgagtcatactgtagaacccaaatt-aaaaaacatagcattatcatcctcact 563
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 365 tgaagcctgagtcatactgtagaacccaaattaaaaaaacatagcattatcatcctcact 306
Query: 564 gaaagttctatttgtgtttcttttacctcaatgatgtgatgcaaatattgtacttgacca 623
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 gaaagttctatttgtgtttcttttacctcaatgatgtgatgcaaatattgtacttgacca 246
Query: 624 cagatgaaaac-tttccctaa 643
||||||||||| |||||||||
Sbjct: 245 cagatgaaaacttttccctaa 225
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 643
Length of database: 1045
Length adjustment: 10
Effective length of query: 633
Effective length of database: 1035
Effective search space: 655155
Effective search space used: 655155
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no498_l06.g1 MSMg01no498_l06.g1 CHROMAT_FILE:
MSMg01no498_l06.g1 PHD_FILE: MSMg01no498_l06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:24:51 2005
(584 letters)
>mm_chr8_54271974_54272959
Length = 986
Score = 946 bits (489), Expect = 0.0
Identities = 562/591 (95%), Gaps = 12/591 (2%)
Strand = Plus / Plus
Query: 1 cactccctggttattaagcattcaactataggagactatggggatgagtcttattcaatc 60
||||||||||||||||| ||||||||||||||||| ||||||||||||| ||||||||||
Sbjct: 201 cactccctggttattaaacattcaactataggagattatggggatgagtattattcaatc 260
Query: 61 tacagcagcctctttagactcatatgcatgagtacttggttccaaatttgtagaactatt 120
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 261 tacagcagcctctttagactcatatgcttgagtacttggttccaaatttgtagaactatt 320
Query: 121 tggaaagaactaggaagaatggccttcttagagaagtcacagtctatcttcacaacaatt 180
|||||||||||||||||||||||||||||||||| | ||||||| |||||||||||||||
Sbjct: 321 tggaaagaactaggaagaatggccttcttagagatgccacagtccatcttcacaacaatt 380
Query: 181 ataaaaaaa--aagaaagataaagggtagacaaaaatcttgtat-aaatatataatggaa 237
| ||||||| ||||||||||||||||||||||||||||||||| ||| |||||||||||
Sbjct: 381 aaaaaaaaagaaagaaagataaagggtagacaaaaatcttgtatgaaa-atataatggaa 439
Query: 238 aactgaatttttt----tttttaaaaccaaacaaaagaaatctggcttcataggaaaatc 293
||||||||||| | | |||||||||||||||||||||||||||||||||| |||
Sbjct: 440 aactgaattttatccagt----aaaaccaaacaaaagaaatctggcttcataggaatatc 495
Query: 294 atcaaatgtagataatgcagcacaagacataagacttcaaaatatatctgatgattgatt 353
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 atcaaatgtagataatgcagcacaagacataagacttcaaaatatatctgatgattgatt 555
Query: 354 aatattcaaacatttaattctccttccagttgaaaacaaatatacatcaccccagccatt 413
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 aatattcaaacatttaattctccttccagttgaaaacaaatatacatcaccccagccatt 615
Query: 414 ctttttgttctatagtcacacagtgaactcatgctttagaactagaaccctaatattcat 473
|||||||||||||||||||||| ||||||||| |||||||||||||||||||| ||||||
Sbjct: 616 ctttttgttctatagtcacacaatgaactcatactttagaactagaaccctaaaattcat 675
Query: 474 tggctgagttaatcaacgagatttactaactagatctaatctttaaacaaattctccctc 533
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 tggctgagttaatcaacaagatttactaactagatctaatctttaaacaaattctccctc 735
Query: 534 ttcagtcatttggcttgttgttcttctgttagactgacaatattatggaag 584
|||||||||||||||| || ||||||||||||||||||| |||||||||||
Sbjct: 736 ttcagtcatttggcttattattcttctgttagactgacagtattatggaag 786
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 584
Length of database: 986
Length adjustment: 10
Effective length of query: 574
Effective length of database: 976
Effective search space: 560224
Effective search space used: 560224
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
