BAC Information

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BAC

Clone NameMSMg01-498L11
Chromosome8 (Build37)
Map Location 104,175,296 - 104,175,647
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneCdh11
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-498L11.T7 (MSMg01no498_l11.b1)MSMg01-498L11.TJ (MSMg01no498_l11.g1)
ACCAG574973AG574974
length746737
length of high quality
(start - end)
536 (80 - 615)352 (311 - 662)
definitionCHROMAT_FILE: MSMg01no498_l11.b1 PHD_FILE: MSMg01no498_l11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:24:52 2005CHROMAT_FILE: MSMg01no498_l11.g1 PHD_FILE: MSMg01no498_l11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:24:52 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCCACTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGAGATCCG
CGGAATTCCTTCTTTTTCTCCAATACCATCATCATGAGATATGCTTTTAA
ATCCAGGTCTGCCTTTTCAGGTGTGTTAGGGTGTCCTGGATTGGGCGAAG
TGGGCGTTCTGGGTTCTGATGATGGTGAGTGGTCCTGGCTTCTGTTAGTA
GGATTCTTACGTTTACCTTTCGCCATCTGTCAATCTCTGGAGTTAGTTGT
TATAGTTGTCTTTGTTAAAAGATTGTTCCTCTGTTGATTTTGTTACCCTC
TATCAGCAGGCGTGGGAGATTTGCTCNCTTCTCTGAGTTTCAGTGGTCAG
AGCAGTCTCTGTAGGCAAGCTCTCCTCTCTCAGGGAAGGTGTACAGTTAT
CTGGTGTTTGGACCTCCTCCTGGCTGAAGGTGAAGGCCCAAAACAGGATC
TTTCCCAGAAGCTGTGTTGCTTTGGCCAGGAAGGTGACCAGTTGTCTGGA
GTCGAAGATGTCGCAGCCTCAGAAGCTCTGTGGCTCCTGCCGGAAGGTGG
CTGGTTGTCTGGAGCTGAGGATGGTGCCGCCCCAGAATCTCTGCGACTCT
CTCGCCCGTCCCAGAAACGGTTGGCACTCTGTATTCCACACGGTCACCCG
TGCAGCCTGTCTTTCTGTTAGTTCCGGAGCCTAGATAGCTCCCGCCGGCG
CCTGTGCCATAAACCTCTCATGTCATGCATACCCCCGTGCTCTCTN
CTGGCGGCCGCCTGGTTCAAAAATGGAGGTGAACTATAGAAGGTTCCGAG
AAATGGCTCTGCAAGTTAGAGCACTGGGTTATCCAAGTTACTGAGGGAAT
AGCAATGGTTTCAATTGCAAGTGTGAGGAGCAGGGAGGATGGATGCTGGG
ATACAGGAAAGGGTAAGGAGGGAGAATTTAGTAAGGAAAGAACACTGTCA
ATCTCCCTCTGGCCCAAGCGGGTGCAAGATGAGTCTTATTACAAATTGTT
TAGACTTTTTTCCATTCATAAATAGGAAGTGCTAAGTATTACTACTAAGC
TTTCCTTTCTACCTCCATGGAGTATCAGGGTAAGATGGGTGCCTGTCAGT
ATGACAGAGACAAGTTAGTGGCTCTTCTTTTCTTAACCATGATTTAACAC
AAATTGTGTTCACAAACACAGGTTGGCTGATAGACAATGTTTGTGCTCCC
AGTAATCTTGGTTTAACAAACACATGAATCCTGCAGTGGAAGGGAAAAAG
GACATTCACGGAACATTTATTATGTTCTAGCAATTCATGAGGTTTTCTAT
GTATAATATCTCACTGAATTTCGTTATTCTGGAATAAAATGCACTATTTG
TCATCTGAGTGAATCTCACCTCAAAGAGTACAAGATTTCTATCTCTACTG
AATGAAGAGCCAAGCCAAGATTTGACTGTAGGGCTTTTCATTCAATATTT
GTAATCATGAATGGATTTGTGGCAGAGACTTTTGTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no498_l11.g1 MSMg01no498_l11.g1 CHROMAT_FILE:
MSMg01no498_l11.g1 PHD_FILE: MSMg01no498_l11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:24:52 2005
         (352 letters)



>mm_chr8_104175096_104175847
          Length = 752

 Score =  627 bits (324), Expect = 0.0
 Identities = 345/352 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   acctccatggagtatcagggtaagatgggtgcctgtcagtatgacagagacaagttagtg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acctccatggagtatcagggtaagatgggtgcctgtcagtatgacagagacaagttagtg 260

                                                                       
Query: 61  gctcttcttttcttaaccatgatttaacacaaattgtgttcacaaacacaggttggctga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gctcttcttttcttaaccatgatttaacacaaattgtgttcacaaacacaggttggctga 320

                                                                       
Query: 121 tagacaatgtttgtgctcccagtaatcttggtttaacaaacacatgaatcctgcagtgga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tagacaatgtttgtgctcccagtaatcttggtttaacaaacacatgaatcctgcagtgga 380

                                                                       
Query: 181 agggaaaaaggacattcacggaacatttattatgttctagcaattcatgaggttttctat 240
           ||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct: 381 agggaaaaaggacattcacggaacacttattatgttctagcaattcatgaggctttctat 440

                                                                       
Query: 241 gtataatatctcactgaatttcgttattctggaataaaatgcactatttgtcatctgagt 300
           |||||||||||||||||||||| ||||||||||||||||||||| ||||||| | |||||
Sbjct: 441 gtataatatctcactgaatttccttattctggaataaaatgcaccatttgtcctatgagt 500

                                                               
Query: 301 gaatctcacctcaaagagtacaagatttctatctctactgaatgaagagcca 352
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 501 gaatctcacctcaaagagtacaagatttctatcactactgaatgaagagcca 552


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 352
Length of database: 752
Length adjustment: 9
Effective length of query: 343
Effective length of database: 743
Effective search space:   254849
Effective search space used:   254849
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)