Query= MSMg01no499_l05.b1 MSMg01no499_l05.b1 CHROMAT_FILE:
MSMg01no499_l05.b1 PHD_FILE: MSMg01no499_l05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:26:09 2005
(611 letters)
>mm_chr8_63293737_63294747
Length = 1011
Score = 1094 bits (566), Expect = 0.0
Identities = 596/606 (98%), Gaps = 1/606 (0%)
Strand = Plus / Minus
Query: 6 aatcagtctagataattcccctgcagacatgcccagagatttgtttccatggtaatttaa 65
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 880 aatcagtctagataatccccctgcagacatgcccagagatttgtttccatggtaatttaa 821
Query: 66 aatctcattaagttgacaatcaatattaatcaccacagtccccattattaaaaagcttat 125
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 820 aatctcattaggttgacaatcaatattaatcaccacagtccccattattaaaaagcttat 761
Query: 126 attctccatagtgaaacaaggcatgcaagtgagttacagaggaaagtttagttgcatata 185
|||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||
Sbjct: 760 attctccatagtgaaacatggcatgcaagtgagttacagaggaaagtttaattgcatata 701
Query: 186 gaaatgtcaatcaatctatatgatcataaaataaacactatatgcctggttatcccatgt 245
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 700 gaaatgtcaatcaatctatatgatcataaaataaacactatatgcctggttatcccatgt 641
Query: 246 caccacacagcaaggtgtgtgctgtttagaacagagaatatacagttacaccctggccca 305
|||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct: 640 caccacacagcaaggtgtgtgctgtttagaacagagaagagacagttacaccctggccca 581
Query: 306 catttggctatgcacatgagttgtcaactatcccggctgctgctacagtaacagaacaga 365
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 580 catttggctatgcacatgagttgtcaactatcccggctgctgctacagtaacagaacaga 521
Query: 366 gtaactgggacagtgaatgtatggtccagaaagttgaaagtatttattgtttggcctttt 425
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 520 gtaactgggacagtgaatgtatggtccagaaagttgaaagtatttactgtttggcctttt 461
Query: 426 atagacaaggtttgccatctttgctatagagaataaaatgagcaaataacagaactgaac 485
||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 460 atagataaggtttgccatctttgctatagagaataaaattagcaaataacagaactgaac 401
Query: 486 acacccgtaaaagtgaatttacagcaaacaagacatctgctatagcaaatgtatccatgt 545
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 acacccgtaaaagtgaatttacagcaaacaagacatctgctatagcaaatgtatccatgt 341
Query: 546 ctttctaagaagaaacaaatgcattggttacttttctgaaattaaattaattttttttat 605
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 340 ctttctaagaagaaacaaatgcattggttacttttctgaaattaaattaa-tttttttat 282
Query: 606 ttgttt 611
||||||
Sbjct: 281 ttgttt 276
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 611
Length of database: 1011
Length adjustment: 10
Effective length of query: 601
Effective length of database: 1001
Effective search space: 601601
Effective search space used: 601601
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no499_l05.g1 MSMg01no499_l05.g1 CHROMAT_FILE:
MSMg01no499_l05.g1 PHD_FILE: MSMg01no499_l05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:26:09 2005
(637 letters)
>mm_chr8_63265094_63266130
Length = 1037
Score = 1201 bits (621), Expect = 0.0
Identities = 633/637 (99%)
Strand = Plus / Plus
Query: 1 tcatcctctcgtgacaatctgtcatgcttttatatttaaaggtccagtctcagtgtttcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 201 tcatcctctcgtgacaatctgtcatgcttttatatttaaaggtccagtctccgtgtttcc 260
Query: 61 accatagaagctgcatcacattctcattagaaatcaaatgatcactttgaaaccgaaaga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 accatagaagctgcatcacattctcattagaaatcaaatgatcactttgaaaccgaaaga 320
Query: 121 aattaggtggaggaaaaggtctgcattggagggcttagcatgaaactgggattttctgcc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aattaggtggaggaaaaggtctgcattggagggcttagcatgaaactgggattttctgcc 380
Query: 181 tcctgtgtgaggaagtgagtgaatgatgagcataatatttatgccagccttgcaattgga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcctgtgtgaggaagtgagtgaatgatgagcataatatttatgccagccttgcaattgga 440
Query: 241 ttattctccgcctccaaaacagagctgctaatatcacactggttctctgggggaagagcg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttattctccgcctccaaaacagagctgctaatatcacactggttctctgggggaagagcg 500
Query: 301 gttgtttatttccccactactcagtctatgcccgaagcagatgtttgaaagactatgatt 360
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 501 gttgtttatttccccactactcattctatgcccgaagcagatgtttgaaagactatgatt 560
Query: 361 gcatatactgaacacacatggctttctggacatcagaaaacaaaacaaaacaactgcgat 420
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gcacatactgaacacacatggctttctggacatcagaaaacaaaacaaaacaactgcgat 620
Query: 421 tgctttcagtgccaggaagatacaagtaaggctacaatcactgtgaggaaagctgggtat 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tgctttcagtgccaggaagatacaagtaaggctacaatcactgtgaggaaagctgggtat 680
Query: 481 gaatctagctctaggaaacttctgcagggactaagagcgagaacagtccatttgtcgagt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gaatctagctctaggaaacttctgcagggactaagagcgagaacagtccatttgtcgagt 740
Query: 541 agtcattgtttcttgttcagggtagagatgtagaagcatccacgtttttcagcattctat 600
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 741 agtcattgtttcttgttcagggtagagatggagaagcatccacgtttttcagcattctat 800
Query: 601 ctactttaatctaaatagcatttccacaggactctca 637
|||||||||||||||||||||||||||||||||||||
Sbjct: 801 ctactttaatctaaatagcatttccacaggactctca 837
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 637
Length of database: 1037
Length adjustment: 10
Effective length of query: 627
Effective length of database: 1027
Effective search space: 643929
Effective search space used: 643929
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
