Query= MSMg01no500_c20.b1 MSMg01no500_c20.b1 CHROMAT_FILE:
MSMg01no500_c20.b1 PHD_FILE: MSMg01no500_c20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:26:46 2005
(658 letters)
>mm_chr8_63431210_63432267
Length = 1058
Score = 1129 bits (584), Expect = 0.0
Identities = 614/630 (97%), Gaps = 10/630 (1%)
Strand = Plus / Minus
Query: 38 gaaaaactaagatcatgtcccatatattgtgctttcctttatgaattgcatatgtgtgca 97
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 1058 gaaaaactaagatcatgtcccatatattgtgctttcctttatgaattgtatatgtgtgca 999
Query: 98 tgtataaattaggatttagtaaaaaaataaataaaagaaattattctttgtacttttaga 157
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 998 tgtataaattaggatttagtaaaaaaataaataaaagaaattattctttgtacttttaga 939
Query: 158 acatttcttctaacattataaaagtataaaaagtacaaaaaataatttctcctaatgatg 217
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 938 acatttcttctaacattataaaagtataaaaagtacaaaaaataatttctcctaatgatg 879
Query: 218 ttctgacatac----------gtgtgtgtgtatatctaaaagtataaggaataaattctt 267
||||||||||| |||||||||| |||||||||||||||||||||||||||
Sbjct: 878 ttctgacatacgtgtgtgtgtgtgtgtgtgtgtatctaaaagtataaggaataaattctc 819
Query: 268 ctaaatttttactccctgggatttttttccttttcctgatagagtttccctgtgtttctg 327
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 818 ctaaatttttactccctggtatttttttccttttcctgatagagtttccctgtgtttctg 759
Query: 328 tcatccgtttcctggtaatattcgtactgaacagtgattattcaaatgtcacattattta 387
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 758 tcatccgtttcctggtaatattcgtattgaacagtgattattcaaatgtcacattattta 699
Query: 388 ctaatatgggaaatggcaaaggcaggcagaccatactttctctgagtgaaaacagcatcc 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 698 ctaatatgggaaatggcaaaggcaggcagaccatactttctctgagtgaaaacagcatcc 639
Query: 448 gtttgttagtactgattaactagaagggttgggcagcactatctgatagtcttggcagta 507
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 638 gtttgttagtactgattaactagaagggttgggcagcactatctgatagtcttggcagtg 579
Query: 508 caaatttatagactgcctgtgtaaaaatgtacaagaaataagaaatgtcataacttatgt 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 578 caaatttatagactgcctgtgtaaaaatgtacaagaaataagaaatgtcataacttatgt 519
Query: 568 caaatgacacgtacagattaccaagagagaaattgaaaaaaatatttctgggacattttc 627
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518 caaatgacacgtacagattaccaagagagaaattgaaaaaaatatttctgggacattttc 459
Query: 628 ttaaatagttccctggaatcatcttgaagg 657
||||||||||||||||||||||||||||||
Sbjct: 458 ttaaatagttccctggaatcatcttgaagg 429
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 658
Length of database: 1058
Length adjustment: 10
Effective length of query: 648
Effective length of database: 1048
Effective search space: 679104
Effective search space used: 679104
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no500_c20.g1 MSMg01no500_c20.g1 CHROMAT_FILE:
MSMg01no500_c20.g1 PHD_FILE: MSMg01no500_c20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:26:46 2005
(557 letters)
>mm_chr8_63265094_63266050
Length = 957
Score = 1054 bits (545), Expect = 0.0
Identities = 554/557 (99%)
Strand = Plus / Plus
Query: 1 tcatcctctcgtgacaatctgtcatgcttttatatttaaaggtccagtctcagtgtttcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 201 tcatcctctcgtgacaatctgtcatgcttttatatttaaaggtccagtctccgtgtttcc 260
Query: 61 accatagaagctgcatcacattctcattagaaatcaaatgatcactttgaaaccgaaaga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 accatagaagctgcatcacattctcattagaaatcaaatgatcactttgaaaccgaaaga 320
Query: 121 aattaggtggaggaaaaggtctgcattggagggcttagcatgaaactgggattttctgcc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aattaggtggaggaaaaggtctgcattggagggcttagcatgaaactgggattttctgcc 380
Query: 181 tcctgtgtgaggaagtgagtgaatgatgagcataatatttatgccagccttgcaattgga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcctgtgtgaggaagtgagtgaatgatgagcataatatttatgccagccttgcaattgga 440
Query: 241 ttattctccgcctccaaaacagagctgctaatatcacactggttctctgggggaagagcg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttattctccgcctccaaaacagagctgctaatatcacactggttctctgggggaagagcg 500
Query: 301 gttgtttatttccccactactcagtctatgcccgaagcagatgtttgaaagactatgatt 360
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 501 gttgtttatttccccactactcattctatgcccgaagcagatgtttgaaagactatgatt 560
Query: 361 gcatatactgaacacacatggctttctggacatcagaaaacaaaacaaaacaactgcgat 420
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gcacatactgaacacacatggctttctggacatcagaaaacaaaacaaaacaactgcgat 620
Query: 421 tgctttcagtgccaggaagatacaagtaaggctacaatcactgtgaggaaagctgggtat 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tgctttcagtgccaggaagatacaagtaaggctacaatcactgtgaggaaagctgggtat 680
Query: 481 gaatctagctctaggaaacttctgcagggactaagagcgagaacagtccatttgtcgagt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gaatctagctctaggaaacttctgcagggactaagagcgagaacagtccatttgtcgagt 740
Query: 541 agtcattgtttcttgtt 557
|||||||||||||||||
Sbjct: 741 agtcattgtttcttgtt 757
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 557
Length of database: 957
Length adjustment: 10
Effective length of query: 547
Effective length of database: 947
Effective search space: 518009
Effective search space used: 518009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
