BAC Information

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BAC

Clone NameMSMg01-500D01
Chromosome8 (Build37)
Map Location 64,407,645 - 64,407,888
singlet/doubletsinglet
Overlap geneBC013672
Upstream geneClcn3, B230317F23Rik, Nek1, Sh3rf1, EG664975, Cbr4, Palld, LOC100040872
Downstream geneAnxa10, LOC100040775, LOC384830, LOC100040804, LOC665267
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-500D01.T7 (MSMg01no500_d01.b1)MSMg01-500D01.TJ (MSMg01no500_d01.g1)
ACCAG576090AG576091
length684689
length of high quality
(start - end)
244 (61 - 304)580 (59 - 638)
definitionCHROMAT_FILE: MSMg01no500_d01.b1 PHD_FILE: MSMg01no500_d01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:26:47 2005CHROMAT_FILE: MSMg01no500_d01.g1 PHD_FILE: MSMg01no500_d01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:26:47 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CGCTAAACGACTCACTATAGGTTTCAGAATCCGCGGAATTCCAGACTTCT
TTCCGACAACAAGGAACCAAAATGAGCACCCAGAACCTGGCTCTGCCCTG
GCAGACATCTTGAGTTCTATGCTGGGCTTTGCAAAAAGCACTTAGCCTGT
GCCTAAACAGAATCTGTAAAATAAAACACCTATTGTGTTTAAAGCAACTC
AGTTTGTGCTGATTTGTGATGAGGAAACAGAAAATCAATCCCTGCTCCTT
ACACATGAATACATTAAATCTCAGATGACTCAAACAGGGAGACTGAGGCA
GCGGTATTCNTTAAGTTGGCCCAACCTGGGTTCCATGGGGAGTACCAGGA
AGCCCAGGGAGACTGCTAGGGCTAGCATACGAAGAGATTGGGTGGGGGGA
TGCATTTCTGCAGTAAAGCATAACTTGTCTTAGCCACTGCAATTTCAGGG
CAACTACAATTCATCTGGGTTTTTCTTCACATTCTGCTTCTAGCTCTGGA
AGCCTGAAGTAGGGCCCCGATTCGATTCGGCACCTAGGAGAAAAACTATT
GGTGGGGATGTTCAACATTTATTGGCTGTGCACACACCCCAATGCCCCTA
CTTATTGATCCCTATCCCAGCTACCCGTTTACAAAGGATCCCCAAGAGAC
TGAGTCAGGCATCTTTTTCCCTGCCACTCACCAN
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXTCACCTGAGGAATACCGAATGGCAGAGAAGCACCTGAAAAAA
TGTTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGAG
AATCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACA
GCAGATGCTGGTGAAGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGG
TGGGATTGCAAGCTTGTACAACCACTCTGAAAATCAGTCTGGCGGTTCCT
CAGAAAATTGGACATAGTACTACCGGAGGATCCAGCAATACCTCTCCTGG
GCATATATCCAGAAGATGTCCCAACCGGTAAGAAGGACACATGCTCCACT
ATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCCAG
ATGCCCCTCAACTGAGGAATGGATACAGAAAATGTGGTACATTTACACAA
TGGAGTACTATTCAGCTATTAAAAAGAATGAATTTATGAAATTCCTAGGC
AAATGGATGGACCTGGAGGGCATCACCCTGAGTGAGGTAACCCAATCACA
AAGGAACTTGCACAATATGTACTCACTGATAAGTGGATATTAGCCCAGAA
ACTTAGGATACCCAAGATATAAGATACAATTTGCTAAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no500_d01.b1 MSMg01no500_d01.b1 CHROMAT_FILE:
MSMg01no500_d01.b1 PHD_FILE: MSMg01no500_d01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:26:47 2005
         (244 letters)



>mm_chr8_64407445_64408088
          Length = 644

 Score =  464 bits (240), Expect = e-135
 Identities = 243/244 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaggaaccaaaatgagcacccagaacctggctctgccctggcagacatcttgagttctat 60
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 444 aaggaaccaaaatgagcacccagaacctggctccgccctggcagacatcttgagttctat 385

                                                                       
Query: 61  gctgggctttgcaaaaagcacttagcctgtgcctaaacagaatctgtaaaataaaacacc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 gctgggctttgcaaaaagcacttagcctgtgcctaaacagaatctgtaaaataaaacacc 325

                                                                       
Query: 121 tattgtgtttaaagcaactcagtttgtgctgatttgtgatgaggaaacagaaaatcaatc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tattgtgtttaaagcaactcagtttgtgctgatttgtgatgaggaaacagaaaatcaatc 265

                                                                       
Query: 181 cctgctccttacacatgaatacattaaatctcagatgactcaaacagggagactgaggca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 cctgctccttacacatgaatacattaaatctcagatgactcaaacagggagactgaggca 205

               
Query: 241 gcgg 244
           ||||
Sbjct: 204 gcgg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space:   149225
Effective search space used:   149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)