BAC Information

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BAC

Clone NameMSMg01-500E08
Chromosome8 (Build37)
Map Location 110,443,290 - 110,443,872
singlet/doubletsinglet
Overlap genenone
Upstream geneCirh1a, EG234703, Sntb2, Vps4a, Cog8, Nip7, Tmed6, Terf2, EG667847, Cyb5b, LOC100042791, Nfat5, Nqo1, Nob1, Wwp2, LOC100042812, Psmd7, LOC100041744, LOC668038
Downstream geneAtbf1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-500E08.T7 (MSMg01no500_e08.b1)MSMg01-500E08.TJ (MSMg01no500_e08.g1)
ACCAG576152AG576153
length684676
length of high quality
(start - end)
270 (37 - 306)577 (59 - 635)
definitionCHROMAT_FILE: MSMg01no500_e08.b1 PHD_FILE: MSMg01no500_e08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:26:53 2005CHROMAT_FILE: MSMg01no500_e08.g1 PHD_FILE: MSMg01no500_e08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:26:53 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAATC
CCTTACCACCTATGTTTAAAACAAACAAAAACAAAAACAAAAACAAAAGC
AAACACTAGCTCTGAGGAGGAAGAGGAGATAGCAGATTCCCAGGGCTACT
ACCAGCCAGCCTAGCCTATACTGCAAGCCTAGGCCCATCTGAGACACTGC
CTCAAAAAACAAGTAGATGGTAGCTGAGAATTGCAGCTGCCTACAGCTGA
GGTTATCCTGTAGCTTCCACATGCATGTGCGCACGTGCACATGCAAACAC
ACACACTTTCTCACACACACACACACACACACACACACACACACACACTG
GACCAGTTTGCTTATAGGAAAAGGCAAGGACTTGGTGATGTTTTCTCTCG
AGATTTTTTTTTAAAGATCTTTGTTTTTATTTCTGTGTGTACTATGCACA
CATGGGGGGAGGGATCTTCCACATGTGTGCAAGTGACTGCATGAGCCAGA
AGAAGGTGTCAGAATTCCTGGAGCTAGAGTTAAAAGCAGTTGTGAGCCAC
CTGTTATGGGTCGTGGGCACCAAACACAGGCCCTCTGCAAGGATTCTAAC
CACTGTAATCTCTGAGCCATCTCTCCAGCCCTGGGTGTTCTCTTGATGGG
ACATTTATTATAATATAAACACAACTCTTCAAGG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXACTCCAGTCAGCAAAGGAAAAAGGTGTCTGATTTGCTGAGGG
ATAGCCTTCCTTTTGATGCCGGCCACCGTCAATTACTAATACACATTTAT
CACCATAAAATGAAGATTTAGACTTCTTTTTAAAGAAAGGGAAGTATGTG
TGTATGTTCATTGTGTGGGAAACACACACACACACACACATTCATACAAA
GGACACTATAAGGGGCTGCCTCTCAAGGGCAGGCTATTACTTGGACTTGC
TTTTAGGCTAAAGCTTTCTCAATGGGATTATACCCCCTCCCATAACCTAT
CAGCTGTCTGATCAGAAATTCATAACTCAGCTCAGCCGCTGCTGCAGGCC
TGCATTTAAATAGGCAAATGCCAGAGCCAGGCGCTGACATTCTCTCCGTC
TCTCTCAATCTCTCTCTGTCTCCGCTCGGCCCTCCTTCAGATCTTATTGC
CTCTTTTTTTCCTCCTTCCCTCCCCCCTCCCCCACCTCCCATTTTATTTT
TAAAATTCCTCCTCATACCACCATCTTATATTAGGCATGAACTAACACGA
TAGGAAATTATTAGAAATAGAGGAAGGATGGTGGCCAGAGAGGCAGGTGC
CATGGGGGTAGGGTGCAGATGATGAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no500_e08.g1 MSMg01no500_e08.g1 CHROMAT_FILE:
MSMg01no500_e08.g1 PHD_FILE: MSMg01no500_e08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:26:53 2005
         (577 letters)



>mm_chr8_110443090_110444072
          Length = 983

 Score = 1054 bits (545), Expect = 0.0
 Identities = 571/583 (97%), Gaps = 6/583 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   actccagtcagcaaaggaaaaaggtgtctgatttgctgagggatagccttccttttgatg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actccagtcagcaaaggaaaaaggtgtctgatttgctgagggatagccttccttttgatg 260

                                                                       
Query: 61  ccggccaccgtcaattactaatacacatttatcaccataaaatgaagatttagacttctt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccggccaccgtcaattactaatacacatttatcaccataaaatgaagatttagacttctt 320

                                                                       
Query: 121 tttaaagaaagggaagtatgtgtgtatgttcattgtgtgggaaacacacacacacacaca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttaaagaaagggaagtatgtgtgtatgttcattgtgtgggaaacacacacacacacaca 380

                                                                       
Query: 181 ca------ttcatacaaaggacactataaggggctgcctctcaagggcaggctattactt 234
           ||      ||||||||||||||||  ||||||||||||||||||||||||||||||||||
Sbjct: 381 cacacacattcatacaaaggacaccgtaaggggctgcctctcaagggcaggctattactt 440

                                                                       
Query: 235 ggacttgcttttaggctaaagctttctcaatgggattataccccctcccataacctatca 294
           ||||||||||  ||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 441 ggacttgcttagaggctaaagctttctcaatgggattataccctctcccataacctatca 500

                                                                       
Query: 295 gctgtctgatcagaaattcataactcagctcagccgctgctgcaggcctgcatttaaata 354
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 501 gctgtctgatcagaaattcataactcagttcagccgctgctgcaggcctgcatttaaata 560

                                                                       
Query: 355 ggcaaatgccagagccaggcgctgacattctctccgtctctctcaatctctctctgtctc 414
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ggcaaatgccagagccaggcgctgacattctctccgtctctctcaatctctctctgtctc 620

                                                                       
Query: 415 cgctcggccctccttcagatcttattgcctctttttttcctccttccctcccccctcccc 474
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cgctcggccctccttcagatcttattgcctctttttttcctccttccctcccccctcccc 680

                                                                       
Query: 475 cacctcccattttatttttaaaattcctcctcataccaccatcttatattaggcatgaac 534
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 cacctcccattttatttttaaaattcctcctcataccaccatcttatattaggcatgaac 740

                                                      
Query: 535 taacacgataggaaattattagaaatagaggaaggatggtggc 577
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 taacacgataggaaattattagaaatagaggaaggatggtggc 783


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 577
Length of database: 983
Length adjustment: 10
Effective length of query: 567
Effective length of database: 973
Effective search space:   551691
Effective search space used:   551691
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)