BAC Information

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BAC

Clone NameMSMg01-500J02
Chromosome8 (Build37)
Map Location 33,418,481 - 33,419,076
singlet/doubletsinglet
Overlap genenone
Upstream gene7420700N18Rik, LOC100041329, EG330731, LOC100041340, Nrg1, 2010007E15Rik, EG666589
Downstream geneEG546052, LOC100042715, LOC628408, EG628412, Wrn
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-500J02.T7 (MSMg01no500_j02.b1)MSMg01-500J02.TJ (MSMg01no500_j02.g1)
ACCAG576377AG576378
length647654
length of high quality
(start - end)
580 (58 - 637)596 (59 - 654)
definitionCHROMAT_FILE: MSMg01no500_j02.b1 PHD_FILE: MSMg01no500_j02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:27:13 2005CHROMAT_FILE: MSMg01no500_j02.g1 PHD_FILE: MSMg01no500_j02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:27:13 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GCTAAACGACTCACTATATTTTCGAAATCCGCGGAATTCTTTGTTTATCT
CTGAACCCCATTTTTTAATGGGGTTATTTGATTTTCTGGAGTCCACCTTC
TTGAGTTCTTTATATATATTGGATATTAGTCCCCTATCCGATTTGGGATA
GGTAAAGATCCTTTCCCAATCTGTTGGTGGCCTTTTTGTCTTATTGACGG
TGTCTTTTGCTTTGCAGAAGCTTTGCAATTTTATGAGGTCCCATTTATCG
ATTCTTGATCTTACAGCACAAGCCTTTGCTGTTCTATTCAGGAATTTTTC
CTCTGTACCCATATCTTCGAGGCTTTTCCCTACTTTCTCCTCTATAAGTT
TCAGTGTCTCTGGTTTTTGTGGAGTTCCTTAATCCACTTAGATTTGACCT
TAGTACAAGGAGATAGAAATGGATCAATTCGCATTCTTCTACATGATAAC
CGCCAGTTGTGCCAGCACCATTTGTTGAAAATGCTGTCTTTTTTCCACTG
GATGGTTTTAGCTCCCTTGTCAAAGATCAAGTGACCATAGGTGTGTGGGT
TCATCTCTGGGTCTTCAATTCTGTTCCATTGGTCTACTTGTCTGTCACTA
TACCAGTACCATGCAGTTTTGATCACAATTGCTCTGTAGTACAGTTT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXAAAATATAGAGCCAGTTTTATAGTCAGCTACAGAAGCCAAAT
TAAAGTGTTTACTATACAGTGCCAACTACCCCTTGCAATTTGGAGGTTAT
ATGTAGTTTCCATAACACACATTTCAAATTCCTAAGAAAAGAAAGTTTTG
GGAATAACTTGAAGCATCTTGGGGCTTTTATTTTTAATTCACAGTGTGAA
TAGATAAACGAGAGTTTTAGTACATGCCCATGCACGCGCGCGCGCACACA
CACACACACACACACACACACACACACACACACACACAAACGGAGTAGGG
AGAAAGATAATACATTCACCAAGATAGAAAGTGATCAATCTTGCTTCTGT
GAAATCCAAGTTGACTTCTTCAGGTCCCCTGGACTTATAATGCAGGGTTG
AGTTTCAGTTGCATGAGAGGCCCATGTAAGTAGTTGAATTTGATATCTTT
GACTACTTCAGACATCATTATTTTCTATGGTCTATTTATATTCAGAGGAT
TTGGAATTTTCCCTTCACTGTTCATATGGCCAAGCAATAAGCCATTGCTA
TGTGCCAGATCCAGATTTTAGGAATTAATGAAATACTTAAAGACACACTA
ACTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no500_j02.g1 MSMg01no500_j02.g1 CHROMAT_FILE:
MSMg01no500_j02.g1 PHD_FILE: MSMg01no500_j02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:27:13 2005
         (596 letters)



>mm_chr8_33418281_33419276
          Length = 996

 Score = 1152 bits (596), Expect = 0.0
 Identities = 596/596 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaaatatagagccagttttatagtcagctacagaagccaaattaaagtgtttactataca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaaatatagagccagttttatagtcagctacagaagccaaattaaagtgtttactataca 260

                                                                       
Query: 61  gtgccaactaccccttgcaatttggaggttatatgtagtttccataacacacatttcaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtgccaactaccccttgcaatttggaggttatatgtagtttccataacacacatttcaaa 320

                                                                       
Query: 121 ttcctaagaaaagaaagttttgggaataacttgaagcatcttggggcttttatttttaat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttcctaagaaaagaaagttttgggaataacttgaagcatcttggggcttttatttttaat 380

                                                                       
Query: 181 tcacagtgtgaatagataaacgagagttttagtacatgcccatgcacgcgcgcgcgcaca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcacagtgtgaatagataaacgagagttttagtacatgcccatgcacgcgcgcgcgcaca 440

                                                                       
Query: 241 cacacacacacacacacacacacacacacacacacacacaaacggagtagggagaaagat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cacacacacacacacacacacacacacacacacacacacaaacggagtagggagaaagat 500

                                                                       
Query: 301 aatacattcaccaagatagaaagtgatcaatcttgcttctgtgaaatccaagttgacttc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aatacattcaccaagatagaaagtgatcaatcttgcttctgtgaaatccaagttgacttc 560

                                                                       
Query: 361 ttcaggtcccctggacttataatgcagggttgagtttcagttgcatgagaggcccatgta 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttcaggtcccctggacttataatgcagggttgagtttcagttgcatgagaggcccatgta 620

                                                                       
Query: 421 agtagttgaatttgatatctttgactacttcagacatcattattttctatggtctattta 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 agtagttgaatttgatatctttgactacttcagacatcattattttctatggtctattta 680

                                                                       
Query: 481 tattcagaggatttggaattttcccttcactgttcatatggccaagcaataagccattgc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tattcagaggatttggaattttcccttcactgttcatatggccaagcaataagccattgc 740

                                                                   
Query: 541 tatgtgccagatccagattttaggaattaatgaaatacttaaagacacactaactc 596
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tatgtgccagatccagattttaggaattaatgaaatacttaaagacacactaactc 796


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 64
Number of extensions: 17
Number of successful extensions: 17
Number of sequences better than 10.0: 1
Number of HSP's gapped: 13
Number of HSP's successfully gapped: 1
Length of query: 596
Length of database: 996
Length adjustment: 10
Effective length of query: 586
Effective length of database: 986
Effective search space:   577796
Effective search space used:   577796
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)