Query= MSMg01no501_b09.b1 MSMg01no501_b09.b1 CHROMAT_FILE:
MSMg01no501_b09.b1 PHD_FILE: MSMg01no501_b09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:27:52 2005
(668 letters)
>mm_chr8_90027084_90028151
Length = 1068
Score = 1237 bits (640), Expect = 0.0
Identities = 658/664 (99%)
Strand = Plus / Minus
Query: 5 gaattcatgtcacttgtgtgaaaaagctataaacatacacaatcataaaaacacacttag 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 868 gaattcatgtcacttgtgtgaaaaagctataaacatacacaatcataaaaacacacttag 809
Query: 65 acatcctgcacaaaatcaatggcgtattattgtagtttattattccttgtggagttcaca 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 808 acatcctgcacaaaatcaatggcgtattattgtagtttattattccttgtggagttcaca 749
Query: 125 ctggtcttcctcctttgatatttatttataaggaagaagcgaaagagcataaatgtcaca 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 748 ctggtcttcctcctttgatatttatttataaggaagaagcgaaagagcataaatgtcaca 689
Query: 185 cttgggacaatactaacactagagctgagcggaatacagacagcagccgccttaatttag 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 688 cttgggacaatactaacactagagctgagcggaatacagacagcagccgccttaatttag 629
Query: 245 gaaagtggagcggtctctgcgaagcaacctcccataatggaggacaaagctgaaggtcac 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 gaaagtggagcggtctctgcgaagcaacctcccataatggaggacaaagctgaaggtcac 569
Query: 305 ggtattattcatttaaaaagacactgataagggtgagaattgaggttcttaagatctgga 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 ggtattattcatttaaaaagacactgataagggtgagaattgaggttcttaagatctgga 509
Query: 365 gtacagttttcttgcttaagtgactagttccttcatgcctggtatggcaaggcagcaggg 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 gtacagttttcttgcttaagtgactagttccttcatgcctggtatggcaaggcagcaggg 449
Query: 425 gtgggggtggggatagtaaatactgtaagaaagaagacagtccctgctcctgggttttgt 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 gtgggggtggggatagtaaatactgtaagaaagaagacagtccctgctcctgggttttgt 389
Query: 485 ggtttttctaccctcagggaaggtcttcttaactttactgctcttacagaaaattagctg 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 ggtttttctaccctcagggaaggtcttcttaactttactgctcttacagaaaattagctg 329
Query: 545 taaccttctctttaacagaacggtctcattttacccgagactgacaaagtgttgtcagag 604
||||||||||||||| |||| ||||||||||||||||||| |||||||||||||||||||
Sbjct: 328 taaccttctctttaagagaaaggtctcattttacccgagattgacaaagtgttgtcagag 269
Query: 605 cagagcgagtccctctgggggagcatcctgcacaccaacacacttacagctgaggttctc 664
|||||||| ||||||||||| ||||||| |||||||||||||||||||||||||||||||
Sbjct: 268 cagagcgaatccctctggggaagcatcccgcacaccaacacacttacagctgaggttctc 209
Query: 665 tcag 668
||||
Sbjct: 208 tcag 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 668
Length of database: 1068
Length adjustment: 10
Effective length of query: 658
Effective length of database: 1058
Effective search space: 696164
Effective search space used: 696164
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no501_b09.g1 MSMg01no501_b09.g1 CHROMAT_FILE:
MSMg01no501_b09.g1 PHD_FILE: MSMg01no501_b09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:27:52 2005
(582 letters)
>mm_chr8_89899076_89900059
Length = 984
Score = 1052 bits (544), Expect = 0.0
Identities = 574/584 (98%), Gaps = 2/584 (0%)
Strand = Plus / Plus
Query: 1 ttgcaaagaaggcatctgtctgactctgctgatcagatttcagcctgtggacacagatga 60
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttgcaaagaaggcatctgtctgcctctgctgatcagatttcagcctgtggacacagatga 260
Query: 61 actaaccaagctccttagcttgctgagcagacccaattccagatgcagcaatgctcgacc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 actaaccaagctccttagcttgctgagcagacccaattccagatgcagcaatgctcgacc 320
Query: 121 atcaacccacactgcccactgtccatcagactctcaggtgtgagggcatcctgcagttcc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atcaacccacactgcccactgtccatcagactctcaggtgtgagggcatcctgcagttcc 380
Query: 181 atttctgaggaccactgttgggaacggagtgagggaatctaagccactccatgttgctgg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atttctgaggaccactgttgggaacggagtgagggaatctaagccactccatgttgctgg 440
Query: 241 gtcctcggtccaaaaaa-gagaagatatattccccaaacgcagtcatgaagtttgtctgg 299
|||||| |||||||||| |||||||||| |||||||||||||||||||||||||| ||||
Sbjct: 441 gtcctcagtccaaaaaaagagaagatatgttccccaaacgcagtcatgaagtttggctgg 500
Query: 300 tggctccttgtctctcacagaactgccccactgtacttggttccaacagaagggcactgt 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tggctccttgtctctcacagaactgccccactgtacttggttccaacagaagggcactgt 560
Query: 360 cctcagggtcgcaacagttctatgctttcatgaaaaaaa-cctaacagctctcagagtga 418
|||||||||| |||||||||||||||||||||||||||| ||||||||||||| ||||||
Sbjct: 561 cctcagggtcccaacagttctatgctttcatgaaaaaaaacctaacagctctcggagtga 620
Query: 419 caggctctgctgtccaggagctctttttccggttcccaggcctgccatgttcatttttgg 478
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 621 caggctctgctgtccaggagctctttttccagttcccaggcctgccatgttcatttttgg 680
Query: 479 taggctaccctgcctagaaggaggagatcacctccacaggcaggatgcccctgaggctgt 538
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 681 taggctaccctgcctagaaggaggagatcacctccacaggcaggatgcccccgaggctgt 740
Query: 539 tgctgatgctgagagtaccttctgctgcaggcactcctgcaccc 582
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tgctgatgctgagagtaccttctgctgcaggcactcctgcaccc 784
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 582
Length of database: 984
Length adjustment: 10
Effective length of query: 572
Effective length of database: 974
Effective search space: 557128
Effective search space used: 557128
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
