Query= MSMg01no501_b21.b1 MSMg01no501_b21.b1 CHROMAT_FILE:
MSMg01no501_b21.b1 PHD_FILE: MSMg01no501_b21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:27:54 2005
(562 letters)
>mm_chr8_55952120_55953081
Length = 962
Score = 1073 bits (555), Expect = 0.0
Identities = 561/563 (99%), Gaps = 1/563 (0%)
Strand = Plus / Minus
Query: 1 ctacaaagggaaattctgtcttgaaaaa-aacaacaaataggtatttgaactataacata 59
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 927 ctacaaagggaaattctgtcttgaaaaacaacaacaaataggtatttgaactataacata 868
Query: 60 ttttatacatatacccatgtatacaaaatacataggatacaaactttcatatacatatag 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 867 ttttatacatatacccatgtatacaaaatacataggatacaaactttcatatacatatag 808
Query: 120 aaatatactcatacatggaaacttatttgtacatttctaaatacacgtttagattctaaa 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 807 aaatatactcatacatggaaacttatttgtacatttctaaatacacgtttagattctaaa 748
Query: 180 tgtgataaaaacagtttagctaaaaagtctcccaaatatgaaagttattttgtctcaaat 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 747 tgtgataaaaacagtttagctaaaaagtctcccaaatatgaaagttattttgtctcaaat 688
Query: 240 ttaaactaattcctggcatgaaggcatgaatatctgaactctgagcagtcaggagaggat 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 687 ttaaactaattcctggcatgaaggcatgaatatctgaactctgagcagtcaggagaggat 628
Query: 300 gatatcagagggccatggaattgagactattttgggctacaaaatggacccaaacctgcc 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 gatatcagagggccatggaattgagactattttgggctacaaaatggacccaaacctgcc 568
Query: 360 tctaaacaaaaacaagcaaacaaacaaaaaaacgcactaaaatcataagcctttagaata 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 tctaaacaaaaacaagcaaacaaacaaaaaaacgcactaaaatcataagcctttagaata 508
Query: 420 tttaaaaggaggacaggcaggaagtccacttcaaaagtcaacacacatcaccctcttgat 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 tttaaaaggaggacaggcaggaagtccacttcaaaagtcaacacacatcaccctcttgat 448
Query: 480 atccaagacagatttccagagatggtgagtgttgaagcctagcaccttaaggtgtccttt 539
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 atccaagatagatttccagagatggtgagtgttgaagcctagcaccttaaggtgtccttt 388
Query: 540 gcaacttgtttcttatttcctct 562
|||||||||||||||||||||||
Sbjct: 387 gcaacttgtttcttatttcctct 365
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 562
Length of database: 962
Length adjustment: 10
Effective length of query: 552
Effective length of database: 952
Effective search space: 525504
Effective search space used: 525504
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no501_b21.g1 MSMg01no501_b21.g1 CHROMAT_FILE:
MSMg01no501_b21.g1 PHD_FILE: MSMg01no501_b21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:27:54 2005
(586 letters)
>mm_chr8_55768166_55769150
Length = 985
Score = 1038 bits (537), Expect = 0.0
Identities = 575/589 (97%), Gaps = 4/589 (0%)
Strand = Plus / Plus
Query: 1 ttgtttataatgaaatgtctttattttttaatttcacttcataatgattcttagtttaca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 198 ttgtttataatgaaatgtctttattttttaatttcacttcataatgattcttagtttaca 257
Query: 61 gtattatatttaatgcaaactagaaaaataagtcaggaggtctatcaacaacagtgtatc 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 258 gtattatatttaatgcaaactagaaaaataagtcaggaggtctatcaacaacagagtatc 317
Query: 121 tgaaagatactattcaaaaatgac---attagtttgtgattcattacatttttagttttt 177
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 318 tgaaagatactattcaaaaatgacaatattagtttgtgattcattacatttttagttttt 377
Query: 178 ttgctaatatacatggaccctttcagaaaaatatgaaagaacagaattatgaggtctaaa 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 ttgctaatatacatggaccctttcagaaaaatatgaaagaacagaattatgaggtctaaa 437
Query: 238 tctttccaagatatgaaaagctgttacaataaaataaaaaaattaatacagatagaaaaa 297
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 tctttccaagatatgaaaatctgttacaataaaataaaaaaattaatacagatagaaaaa 497
Query: 298 gattagaaacaatgtgctggtttggcatacatcatccaccactgctaatttttctaaatc 357
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 -aatagaaacaatgtgctggtttggcatacatcatccaccactgctaatttttctaaatc 556
Query: 358 atttttaaatccctgaaatgttctgtttctacagaaaggcttatatttacaaaaatactt 417
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 557 atttttaaatccctgaaatgttctgtttctacagaaaggtttatatttacaaaaatactt 616
Query: 418 ggggttcaaatatagtcacttttatttatcaataccccctgaattagaaaataaaacatt 477
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 617 ggggttcaaatatagtcacttttatttatcaatacaccctgaattagaaaataaaacatt 676
Query: 478 aatttgaagagtaatagttagttttttatctttgtatgaggaaacataggtttaagtgcg 537
|||||||||||| ||||||| |||||||||||||||||| ||||||||||||||||||||
Sbjct: 677 aatttgaagagtgatagttaattttttatctttgtatgatgaaacataggtttaagtgcg 736
Query: 538 aaggaaataatcatcctagatcaacacatgtgtttatgtatgcctgcat 586
|||||||| ||||||||||||||| ||||||||||||||||||||||||
Sbjct: 737 aaggaaatgatcatcctagatcaaaacatgtgtttatgtatgcctgcat 785
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 586
Length of database: 985
Length adjustment: 10
Effective length of query: 576
Effective length of database: 975
Effective search space: 561600
Effective search space used: 561600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
