BAC Information

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BAC

Clone NameMSMg01-501M10
Chromosome8 (Build37)
Map Location 67,775,111 - 67,775,711
singlet/doubletsinglet
Overlap genenone
Upstream geneCpe, Sc4mol, Klhl2, LOC100040903, LOC619647, 3110005G23Rik, Trim75, Trim60, LOC665388, LOC665396, LOC100040949
Downstream geneLOC665405, Vaultrc-ps1, LOC100040967, March1, LOC100040986
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-501M10.T7 (MSMg01no501_m10.b1)MSMg01-501M10.TJ (MSMg01no501_m10.g1)
ACCAG577290AG577291
length715715
length of high quality
(start - end)
609 (36 - 644)582 (57 - 638)
definitionCHROMAT_FILE: MSMg01no501_m10.b1 PHD_FILE: MSMg01no501_m10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:28:39 2005CHROMAT_FILE: MSMg01no501_m10.g1 PHD_FILE: MSMg01no501_m10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:28:40 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTTGT
TTTCTTCTGAGCCCCATTTTTTAATGGGGTTATTCGATTTTCTGAAGTCC
ACCTTCTTGAGTTCTTTATATATGTTGGATATTAGTCCCCTATCTGATTT
AGGATAGGTAAAGATCCTTTCCCAATCTGATGGTGGTCTTTTTGTCTTAT
TAACGGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTTCATTAGGTCCCAT
TTGTCAATTCTCGATCTTACAGCACAAGTCATTGCTGTTCTGTTCAGGAA
TTTTTCCCCTGTGCCCATATCTTCAAGGCTTTTCCCCACTTTCTCCTCTA
TAAGTTTCAGTGTCTCTGGTTTTATGTGAAGTTCCTTGATCCACTTAGAT
TTGACCTTAGTACAAGGAGATAAGTATGGATCGATTCGCATTCTTCTACA
CGATAACAACCAGTTGTGCCAGCACCAATTGTTGAAAATGCTGTCTTTCT
TCCACTGGATGGTTTTAGCTCCCTTGTCGAAGATCAAGTGACCATAGGTG
TGTGGGTTCATTTCTGGATCTTCAATTCTATTCCATTGGTCTACTTGTCT
GTCTCTATACCAATACCATGCAGTTTTTATCACAGTTGCTCTGTAGTAAA
GCTTTAGGTCCAGCATGGTGATTCCCCAGAGGTTCTTTTATCCTTGAGAA
GACTTTTTGCTATCC
CCTGGCGGCCGCCTGTTTCACAAATTGGGGTGAACTATAGAAGTTTCGCA
AAAATCAGGAAGAGTTGGGGCTGGGGAGTGAAGAGTAGATATGATCAAAA
TGTGTTATACTTGTGTACTAAATTCTCAAAAATAAAACAAATAAATAAGA
TGGAGAGTGATTGGGAAAGACACCTGACATCAGCCTCTAACTCCCAAGCC
CCACCCAGAGAACAATAAAGGCTGTAGGATAAAGTGGTTGTCTTTGTTAG
TGTTTTACTGCTGTGAACAGACACCATGACCAATGCAAGTCTTATAAAGG
ACAGAATTATTTGGTGCTGGCTTAGAGGTCAGAGGTTCAGTCCATTATTA
AGGCAGGAGCACGGCAGAGTCTAGGCAAGCATGGTACAGCAGAGCTGAGA
GTTCTACACCTTCACCTGAAGGCTGCTAGCAGAATACTGGCTTCTTGGCA
GCTAGAATGAGGGTCTTAAACCCAACACCCACAGTGACACACCTACTCCA
ACAAGGCCATGCCCACTCCAACAGGGCCACTTCCTGGGGTGAGCATATAC
AAACCATCACAATGGTGTTCTGATAGGATTAAAGAATTCAGACAGCAGTT
GGTTGAGAGGAAGGACAGGAAATCATGATGAGAGAGGAAATAGAGGTCTT
TATGACTGGTTCATCTTTAAGACCATGTAAGTCTCAAGTGTTCTCACATT
TATGAAGCAGGACTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no501_m10.g1 MSMg01no501_m10.g1 CHROMAT_FILE:
MSMg01no501_m10.g1 PHD_FILE: MSMg01no501_m10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:28:40 2005
         (582 letters)



>mm_chr8_67774911_67775892
          Length = 982

 Score = 1065 bits (551), Expect = 0.0
 Identities = 580/601 (96%), Gaps = 19/601 (3%)
 Strand = Plus / Plus

                                                                       
Query: 1   aggaagagttggggctggggagtgaagagtagatatgatcaaaatgtgttatacttgtgt 60
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aggaagagttgggggtggggagtgaagagtagatatgatcaaaatgtgttatacttgtgt 260

                                                                       
Query: 61  actaaattctcaaaaataaaacaaataaataagatggagagtgattgggaaagacacctg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 actaaattctcaaaaataaaacaaataaataagatggagagtgattgggaaagacacctg 320

                                                                       
Query: 121 acatcagcctctaactcccaagccccacccagagaacaataaaggctgtaggataaagtg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acatcagcctctaactcccaagccccacccagagaacaataaaggctgtaggataaagtg 380

                                                                       
Query: 181 gttgtctttgttagtgttttactgctgtgaacagacaccatgaccaatgcaagtcttata 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gttgtctttgttagtgttttactgctgtgaacagacaccatgaccaatgcaagtcttata 440

                                                                       
Query: 241 aaggacagaa-ttatttggtgctggcttagaggtcagaggttcagtccattattaaggca 299
           |||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaggacagaaattaattggtgctggcttagaggtcagaggttcagtccattattaaggca 500

                                                                       
Query: 300 ggagcacggcagagtctaggcaagcatggtacagcagagctgagagttctacaccttcac 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ggagcacggcagagtctaggcaagcatggtacagcagagctgagagttctacaccttcac 560

                                                                       
Query: 360 ctgaaggctgctagcagaatactggcttcttggcagctagaatgagggtcttaaacccaa 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctgaaggctgctagcagaatactggcttcttggcagctagaatgagggtcttaaacccaa 620

                                                                       
Query: 420 cacccacagtgacacacctactccaacaaggccatgcccactccaacagggccac----- 474
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||     
Sbjct: 621 cacccacagtgacacacctactccaacaaggccatgcccactccaacagggccacgccct 680

                                                                       
Query: 475 -------------ttcctggggtgagcatatacaaaccatcacaatggtgttctgatagg 521
                        |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ctaataatgccacttcctggggtgagcatatacaaaccatcacaatggtgttctgatagg 740

                                                                       
Query: 522 attaaagaattcagacagcagttggttgagaggaaggacaggaaatcatgatgagagagg 581
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 attaaagaattcagacagcagttggttgagaggaaggacaggaaatcatgatgagagagg 800

            
Query: 582 a 582
           |
Sbjct: 801 a 801


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 582
Length of database: 982
Length adjustment: 10
Effective length of query: 572
Effective length of database: 972
Effective search space:   555984
Effective search space used:   555984
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)