BAC Information

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BAC

Clone NameMSMg01-501O01
Chromosome8 (Build37)
Map Location 72,813,640 - 72,972,577
singlet/doubletdoublet
Overlap geneHomer3, Ddx49, Cope, Lass1, Upf1, Comp, Crtc1
Upstream geneD130040H23Rik, LOC665561, LOC670593, EG665578, LOC622336, LOC100041482, LOC673968, AI449175, EG636741, 1200003I07Rik, D330038O06Rik, Atp13a1, Gmip, Edg4, Pbx4, Cilp2, BC028663, Ndufa13, Tssk6, Gatad2a, LOC665649, 9130404D08Rik, Sf4, Tm6sf2, Hapln4, Ncan, Rfxank, 2310073E15Rik, 2310045N01Rik, Mef2b, Tmem161a, Slc25a42, Armc6, Sfrs14
Downstream geneKlhl26, Tmem59l, Crlf1, 2810428I15Rik, Uba52, Fkbp8, Ell, Isyna1, Ssbp4, Lrrc25, Gdf15, Pgpep1, Lsm4, Jund1, 2410018E23Rik, LOC100041434, Pde4c, Rab3a, BC051227, Ifi30, Pik3r2, LOC100041971, Mast3, Il12rb1, Arrdc2, Kcnn1, LOC100042011, Ccdc124, Slc5a5, Rpl18a, Snora68, Mtap1s, LOC100042057, LOC665858, LOC384645, LOC100041583, EG621377, 2410004L22Rik, Myo9b, 2010315L10Rik, Ocel1, Nr2f6, Ushbp1, 5430437P03Rik, Ankrd41
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-501O01.T7 (MSMg01no501_o01.b1)MSMg01-501O01.TJ (MSMg01no501_o01.g1)
ACCAG577368AG577369
length706673
length of high quality
(start - end)
367 (311 - 677)330 (304 - 633)
definitionCHROMAT_FILE: MSMg01no501_o01.b1 PHD_FILE: MSMg01no501_o01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:28:47 2005CHROMAT_FILE: MSMg01no501_o01.g1 PHD_FILE: MSMg01no501_o01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:28:47 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(72,813,640 - 72,814,006)(72,972,249 - 72,972,577)
sequence
GCTATACGACTCACTTATCAGAGAGAGCCGCGGAATTCACTAGNATTCGC
AAAAACCTTGCCTCCCATCAGGTAGGTGTTCCTGCACCCCATGTCTTACA
GTACCCCATGACTACCACACCCCTGAGGCAGCCATATATGCTTCTGATAT
CAGGGGCCATGCACTGTATTAGTGTCTAAGGATGGCTGGTGGCCTAACCA
CATTTATGCACGTGTGCACACATGTGCGTGTGCCTGGTTGCACATGTGGA
GCTCTGAGGATAACTTGTGGGCGTCAGTTCTCTTCTTTCAGCGGGGCATC
ATGTTTGTTGACTAGCCCTTCCGCTGGCCCATGCCTCAATTTTACCTGAG
GGAGAGCAGTTCCAAGTGTTCAGATCCCTGTTTCTGTAGGCTGTTCTGAT
TTGGCCCTGAGGGACACCAGGCAGGTGGGGGACAGGATTCCCTATCCAGA
GGTTCTGGGGAGATATGGAGCACCAGTGAGGAAAGAGACACACTGGTCAT
CGGGGGTCAGTTCAGACTCCCTGACCTCAATACCCCAGTGGCTTCAATCA
ACTTTACTTCCTACCATGACCTTGACTGAAGCAAATGCCCACCGTGACCC
AGTCCTGGCTCCCATGCACAGGTTCCTCCAAGCCCCTTGGTCAGCACCAA
TGGTCCAGGCGAGGAAAAGCTGTTCCGTAGCCAGAGTGCGGACACCCCTG
GCCCCA
GCCTGGGTCAAAACAGGGAGGTGAACTATANAAGTTTCCACAAAATAGCC
TGCCTAGAGTCCCTCAGTGAACCCCTCAGGGGCTTAGGATATGGCTCAGG
GGTGGAGCCTTTACCTAGAATGCCCCAGTGAGGGCCTGGGGGTGTGGCTC
AGGGCTGGAGTCCCTACCTAGATTCTGTCAGTGAGGGGCTGGGTGGGGGT
ATGGCTCAGGGGTGGAGCACCTGCCTAGATATCCTCTAGTTAGGTTCTAT
GGGTGTGGCTCAACGGTAGAGTCCCTGCCTAGAATCCCCCAGTGTTGGTC
NGATGGCAGGTCTTCGTGGCAAAGGCGAGACCTAATATGACTGAGCCCCT
GGTTTTTATCTCATTACACGTAAAGAAGCCAGCTCCTGTGTCTGGCAGAT
GCCCTTGGGCGGATTGGTAGCATCACCACCCCTGGTCTTTCTCTGTCTTT
AATCTTACAGCCTTAGGCCCCTGAACTGCCTTGAGCCCAGGGACACTGTT
TCCGGCTTCTTCCTAGAGGTCTGGCCAAGGTCCTCAGGAACCTCCCTCCA
CACCTGGGCTCTGGCTGTGGGAAACTGCCCTCTCAGGGGACGGTGGTTTG
CAGGCCCGAGAGACAGGCCAAGTGTGACTTCCAGGGCCTCGCGGTGAGTC
AGGCCACGGGGGCCTCCGGGGAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no501_o01.b1 MSMg01no501_o01.b1 CHROMAT_FILE:
MSMg01no501_o01.b1 PHD_FILE: MSMg01no501_o01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:28:47 2005
         (367 letters)



>mm_chr8_72813440_72814206
          Length = 767

 Score =  710 bits (367), Expect = 0.0
 Identities = 367/367 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   actagcccttccgctggcccatgcctcaattttacctgagggagagcagttccaagtgtt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actagcccttccgctggcccatgcctcaattttacctgagggagagcagttccaagtgtt 260

                                                                       
Query: 61  cagatccctgtttctgtaggctgttctgatttggccctgagggacaccaggcaggtgggg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cagatccctgtttctgtaggctgttctgatttggccctgagggacaccaggcaggtgggg 320

                                                                       
Query: 121 gacaggattccctatccagaggttctggggagatatggagcaccagtgaggaaagagaca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gacaggattccctatccagaggttctggggagatatggagcaccagtgaggaaagagaca 380

                                                                       
Query: 181 cactggtcatcgggggtcagttcagactccctgacctcaataccccagtggcttcaatca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cactggtcatcgggggtcagttcagactccctgacctcaataccccagtggcttcaatca 440

                                                                       
Query: 241 actttacttcctaccatgaccttgactgaagcaaatgcccaccgtgacccagtcctggct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 actttacttcctaccatgaccttgactgaagcaaatgcccaccgtgacccagtcctggct 500

                                                                       
Query: 301 cccatgcacaggttcctccaagccccttggtcagcaccaatggtccaggcgaggaaaagc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cccatgcacaggttcctccaagccccttggtcagcaccaatggtccaggcgaggaaaagc 560

                  
Query: 361 tgttccg 367
           |||||||
Sbjct: 561 tgttccg 567


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 367
Length of database: 767
Length adjustment: 9
Effective length of query: 358
Effective length of database: 758
Effective search space:   271364
Effective search space used:   271364
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no501_o01.g1 MSMg01no501_o01.g1 CHROMAT_FILE:
MSMg01no501_o01.g1 PHD_FILE: MSMg01no501_o01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:28:47 2005
         (330 letters)



>mm_chr8_72972048_72972777
          Length = 730

 Score =  636 bits (329), Expect = 0.0
 Identities = 329/329 (100%)
 Strand = Plus / Minus

                                                                       
Query: 2   ggcaggtcttcgtggcaaaggcgagacctaatatgactgagcccctggtttttatctcat 61
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 530 ggcaggtcttcgtggcaaaggcgagacctaatatgactgagcccctggtttttatctcat 471

                                                                       
Query: 62  tacacgtaaagaagccagctcctgtgtctggcagatgcccttgggcggattggtagcatc 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 470 tacacgtaaagaagccagctcctgtgtctggcagatgcccttgggcggattggtagcatc 411

                                                                       
Query: 122 accacccctggtctttctctgtctttaatcttacagccttaggcccctgaactgccttga 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 410 accacccctggtctttctctgtctttaatcttacagccttaggcccctgaactgccttga 351

                                                                       
Query: 182 gcccagggacactgtttccggcttcttcctagaggtctggccaaggtcctcaggaacctc 241
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 gcccagggacactgtttccggcttcttcctagaggtctggccaaggtcctcaggaacctc 291

                                                                       
Query: 242 cctccacacctgggctctggctgtgggaaactgccctctcaggggacggtggtttgcagg 301
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 290 cctccacacctgggctctggctgtgggaaactgccctctcaggggacggtggtttgcagg 231

                                        
Query: 302 cccgagagacaggccaagtgtgacttcca 330
           |||||||||||||||||||||||||||||
Sbjct: 230 cccgagagacaggccaagtgtgacttcca 202


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 330
Length of database: 730
Length adjustment: 9
Effective length of query: 321
Effective length of database: 721
Effective search space:   231441
Effective search space used:   231441
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)