BAC Information

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BAC

Clone NameMSMg01-502D13
Chromosome8 (Build37)
Map Location 71,970,728 - 71,971,410
singlet/doubletsinglet
Overlap geneLOC670593
Upstream gene4732435N03Rik, Ints10, Lpl, LOC100041138, Slc18a1, Atp6v1b2, Lzts1, EG665540, D10627, LOC665553, D130040H23Rik, LOC665561
Downstream geneEG665578, LOC622336, LOC100041482, LOC673968, AI449175, EG636741, 1200003I07Rik, D330038O06Rik, Atp13a1, Gmip, Edg4, Pbx4, Cilp2, BC028663, Ndufa13, Tssk6, Gatad2a, LOC665649, 9130404D08Rik, Sf4, Tm6sf2, Hapln4, Ncan, Rfxank, 2310073E15Rik, 2310045N01Rik, Mef2b, Tmem161a, Slc25a42, Armc6, Sfrs14, Homer3, Ddx49, Cope, Lass1, Upf1, Comp, Crtc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-502D13.T7 (MSMg01no502_d13.b1)MSMg01-502D13.TJ (MSMg01no502_d13.g1)
ACCAG577628AG577629
length745749
length of high quality
(start - end)		184 (125 - 308)673 (77 - 749)
definitionCHROMAT_FILE: MSMg01no502_d13.b1 PHD_FILE: MSMg01no502_d13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:29:11 2005CHROMAT_FILE: MSMg01no502_d13.g1 PHD_FILE: MSMg01no502_d13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:29:12 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
ATCAAAATTTGCGGCCGCGAAACGATTCCTATTTCATACTGGAGCCGCGG
AATTCCAATTTACTTCATGAGTGTGGGCTTCTTGTACACACCAGAAAAAG
TTCCAACCTTGTGCTCCTAATTGTTCTGCTGTGCTTTGTCTAAATGAACT
TTTATGAGCTGGCTGCCATCCAGTTTCACACAGATCCTCTACCCACAATT
TCACTTGGGAAGACCAAGTCTGCTGTCATGCACTACTGTCAGGGTGTGGT
TTCTGGGGCGCTTCTGCTTATTTTTCGTACGGATTTTCCAGGTTGGCTTG
GGCAGAATCCTTTNCTGTATTATGAACACAACTTGCTTCCCACTGAATTT
TTTCTCCAATTCACGAACTAGCCTGACATGAATTTTCTGGAAAGACTTAA
AGCTGAGGAACTGGTACAAAAATTATGGTAGCTTTCCGACCACCACCAAC
TTCAATTTCCTTGGTTGTGGTGATGTTGACTTCCTGCAGCAGAGCCTTGA
CATCTGCGTTCATCTCCAGCTCGAGCAGCACCTGAGAGAGGCCAGACTTG
GAACTCATCCGGCTTCTCCCCATTTGGCTTCACAGTCTTGGCACTGGAGT
TGAATATGGCTTCATTCTTACGGAGTGCCAACTTAAAACGAGGTATATCC
TGGCTAGAAACTCGCTTCCATATAATTTTCTGGTTCAGAGTCCTTCTCTA
TAGGAGGAGCTTGCTGTTTAAACTTCCTACCATGGCTTTAGATGA

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXACTTTTCAGCAATTGACTATGATT
GCTGACTGCTCTCCTCCCACCTTTTCTCAAGAGAAAATATGAGGAATACT
TAGCTCTTAATTAAAACACAAACAAAGGTGCACGCGCACGCAAACACACA
AACACACACACACACACACTAAAAAGAATTAAAGACAAGATCGGGCATGC
TCAGGGTGGTTTGGCTGTAGACACTTATGGAAGTCTAAAAGGAAGGATTC
CAGGCCTGAAGGAGATAGTAACTTCAGAGAATGACCAACCACCAGAATCA
AATAACATGAACCCTCAGGGCACTCAGAGATGGAACAATGAAACAAAGAA
CAAACATGGGTTGGACGGATATCTCCGAGCACCTATGTAGCAGAGGGGCA
GCTAGGTCTTCACATGGGTCCCAATCAACTGGAATGGGGGTATCAAAAAA
AGCTGTTCATCCTACCTCAGTTTTATTCTTCTAGCTGAGCTACTTTTTCT
GTCCTCAGAGAGAGACGAAGTGCCAGGGTTTGGACATACAGGGAGTCCCA
AACTGCTCAGAGGTGAAGTGGAGGAGGGGCAGGGAGAGACTGTGGGACTG
GGTGACCAGGAGGGGGTCACTGAGCTAGATGTAAACATAAGAAAAAAATT
AAATTAAATTTTTACAGAAATCATTAAAGTTTTGAAATGTATCTTCAAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no502_d13.g1 MSMg01no502_d13.g1 CHROMAT_FILE:
MSMg01no502_d13.g1 PHD_FILE: MSMg01no502_d13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:29:12 2005
         (673 letters)



>mm_chr8_71970528_71971600
          Length = 1073

 Score = 1139 bits (589), Expect = 0.0
 Identities = 654/683 (95%), Gaps = 14/683 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   acttttcagcaattgactatgattgctgactgctctcctcccaccttttctcaagagaaa 60
           |||||||||||||||||||||||||||||||||||  |||||||||||||||||||| ||
Sbjct: 201 acttttcagcaattgactatgattgctgactgctcagctcccaccttttctcaagaggaa 260

                                                                       
Query: 61  atatgaggaatacttagctcttaattaaaacacaaacaaaggtgcacgcgcacgcaa--- 117
           |||||||||||||||||||||||||||||||||||||||| |||||| | |||||||   
Sbjct: 261 atatgaggaatacttagctcttaattaaaacacaaacaaaagtgcacacacacgcaaaca 320

                                                                       
Query: 118 ---acacacaaac----acacacacacacacactaaaaagaattaaagacaagatcgggc 170
              ||||||||||    |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cacacacacaaacacaaacacacacacacacactaaaaagaattaaagacaagatcgggc 380

                                                                       
Query: 171 atgctcagggtggtttggctgtagacacttatggaagtctaaaaggaaggattccaggcc 230
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atgctcagggtggtttggctgtagacacttatggaagtctaaaaggaaggattccaggcc 440

                                                                       
Query: 231 tgaaggagatagtaacttcagagaatgaccaaccaccagaatcaaataacatgaaccctc 290
           |||||||||||| |||| ||||| ||||||||| ||||||||||||||||||||||||||
Sbjct: 441 tgaaggagataggaactccagaggatgaccaactaccagaatcaaataacatgaaccctc 500

                                                                       
Query: 291 agggcactcagagatggaacaatgaaacaaagaacaaacatgggttggacggatatctcc 350
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agggcactcagagatggaacaatgaaacaaagaacaaacatgggttggacggatatctcc 560

                                                                       
Query: 351 gagcacctatgtagcagaggggcagctaggtcttcacatgggtcccaatcaactggaatg 410
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gagcacctatgtagcagaggggcagctaggtcttcacatgggtcccaatcaactggaatg 620

                                                                       
Query: 411 ggggtatcaaaaaaagctgttcatcctacctcagttttattcttctagctgagctacttt 470
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ggggtatcaaaaaaagctgttcatcctacctcagttttattcttctagctgagctacttt 680

                                                                       
Query: 471 ttctgtcctcagagagagacgaagtgccagggtttggacatacagggagtcccaaactgc 530
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 681 ttctgtcctcagagagagacgaagtgccagggtttggacatacatggagtcccaaactgc 740

                                                                       
Query: 531 tcagaggtgaagtggaggaggggcagggagagactgtgggactgggtgaccaggaggggg 590
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tcagaggtgaagtggaggaggggcagggagagactgtgggactgggtgaccaggaggggg 800

                                                                       
Query: 591 tcactgagctagatgtaaacat----aagaaaaaaattaaattaaatttttacagaaatc 646
           ||||||||||||||||||||||    ||||||||||| ||||||| |||||||| | |||
Sbjct: 801 tcactgagctagatgtaaacatgaacaagaaaaaaataaaattaagtttttacatatatc 860

                                  
Query: 647 attaaagttttgaaatgtatctt 669
           |||||||||||||||||||||||
Sbjct: 861 attaaagttttgaaatgtatctt 883


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 673
Length of database: 1073
Length adjustment: 10
Effective length of query: 663
Effective length of database: 1063
Effective search space:   704769
Effective search space used:   704769
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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