BAC Information

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BAC

Clone NameMSMg01-502F12
Chromosome8 (Build37)
Map Location 74,022,842 - 74,023,426
singlet/doubletsinglet
Overlap genePlvap
Upstream geneCrlf1, 2810428I15Rik, Uba52, Fkbp8, Ell, Isyna1, Ssbp4, Lrrc25, Gdf15, Pgpep1, Lsm4, Jund1, 2410018E23Rik, LOC100041434, Pde4c, Rab3a, BC051227, Ifi30, Pik3r2, LOC100041971, Mast3, Il12rb1, Arrdc2, Kcnn1, LOC100042011, Ccdc124, Slc5a5, Rpl18a, Snora68, Mtap1s, LOC100042057, LOC665858, LOC384645, LOC100041583, EG621377, 2410004L22Rik, Myo9b, 2010315L10Rik, Ocel1, Nr2f6, Ushbp1, 5430437P03Rik, Ankrd41, Abhd8, Mrpl34, 1500034J01Rik, Tmem16h, Gtpbp3
Downstream geneLOC665928, Bst2, 1110012M11Rik, BC033932, Txnl6, Slc27a1, Pgls, Bcnp1, Glt25d1, Unc13a, Jak3, Insl3, B3gnt3, LOC100042289, Fcho1, EG665991, LOC665996, LOC385024, LOC675190, Zfp709, LOC670453, Zfp617, BC049349, Cyp4f18, LOC666033, Olfr372, Olfr373, Olfr374, Tpm4, Rab8a, Hsh2d, Cib3, 2510049I19Rik, Ap1m1, LOC384840, LOC100042405, Klf2, Eps15l1, Calr3, LOC100042421, 1700030K09Rik, Cherp, Slc35e1, Crsp7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-502F12.T7 (MSMg01no502_f12.b1)MSMg01-502F12.TJ (MSMg01no502_f12.g1)
ACCAG577720AG577721
length714757
length of high quality
(start - end)		460 (38 - 497)586 (76 - 661)
definitionCHROMAT_FILE: MSMg01no502_f12.b1 PHD_FILE: MSMg01no502_f12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:29:21 2005CHROMAT_FILE: MSMg01no502_f12.g1 PHD_FILE: MSMg01no502_f12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:29:21 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTTCGAAGAGGATCCGCGGAATTCCTGTTTTCCCAACAATGGCTTGTGCT
GTAAGGTCAAGAATTGACAAATGGGACCTCATAAAATTGCAAAGCTTCTG
TAAGGCAAAAGACACTGTCAATAAGACAAAAAGGCCACCAACAGATTGGG
AAAGTGTCTTTACCAATTCTAAATCAGATAGGGGACTAATATCCAATATA
TAAAGAACTCAAGAAGATAGACTCCAGAAAATCAAATAACCCTATTAAAA
ATGGGGTACAGCCCGGTGTGGTGGCACACGCCTTTTATTCCAGCACTTGG
GAGGCAGAGGCAGGCAGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAAA
GTGAGTTCCAGGACAGCGAGGGCTATACATAGAAACCCTGTCTCCTAAAA
AAAAACAAAAAGAAAAAAATTTTAAATGGGGTACAAAGTTAAACAAAGAA
TTCTCAACTGAGGAATACCGAATGGCTGTGAAGCATCTGAAAAAATGTTC
AATATCCTTAATCACCAGGGAAATGCAAATCAAAACAACCCTGAGATTCC
ACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGATAACAGA
TGCTGGCGAGGATTGCTGGTAGATTGCTAGCTGGGACAACCACTCTGGGA
ATCAGTCTGGTGGTTTCTCATAATATTAGACATAGTACTACCTGGAAAAC
CCGTTATTTCTCTC

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTGTAGCTGTTGGTTGTCTCCTTCCA
CCATGTGGCTCTGGGAGCAAATTCAGGTCACGAAGCTTTCAAGTGTCTTC
TCCCAGTGAGCCCTCTCTCGGCCATGATTCTCTTATCTGACTTTCTGACA
CTGTGGGAAGACTATACTGGAATCTTCCACAAGTTCACTAAGGAAAGGAC
CTAGGGAGGAGCATGGGGACTCTGGGAAGTGTGCCTTGGAAAGAGTGACC
AGTGGGAGGCGAGTGATGTTATGGGAACCCAGCCTTACCTCATGGCTGTG
AAGGACTTTGCGGGTTCCAGAAGGCTGTGGGCAGCACGGAGCTTGGCCTA
CATGGAGATTTACAATGGGTTCACTCTGGTTAATCCAGAGGAAGTGACCT
GGGCAAGAACAGAGGTCACCAGGCAGTCAGGGAGGGGACCAGAGCCAGCC
TGAAGGAGAGCCTAGGGGCCCCGGGAAGAGCTGGGGACGGAAGGGAGGGA
GGGGGGAGAGGAAGCCAGACTTGGCTGCAGACCCCCCACCCCCACCAGGA
AATGCCTCAGCACCACTTCTGACCCCATAGGAGCTCCTCTGCCAGGCGGG
GGTGGGGGGCGGGGGACCATTCCAGCCTGATGGATGCTGTGGGGGTTGGG
CAGAAACCTCTTTGGAATGTTGGCACCTTAGTTGGGGTGATGCCCTCCTT
GTGTGAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no502_f12.g1 MSMg01no502_f12.g1 CHROMAT_FILE:
MSMg01no502_f12.g1 PHD_FILE: MSMg01no502_f12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:29:21 2005
         (586 letters)



>mm_chr8_74022544_74023528
          Length = 985

 Score = 1102 bits (570), Expect = 0.0
 Identities = 582/586 (99%), Gaps = 1/586 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgtagctgttggttgtctccttccaccatgtggctctgggagcaaattcaggtcacgaag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 883 tgtagctgttggttgtctccttccaccatgtggctctgggagcaaattcaggtcacgaag 824

                                                                       
Query: 61  ctttcaagtgtcttctcccagtgagccctctctcggccatgattctcttatctgactttc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 823 ctttcaagtgtcttctcccagtgagccctctctcggccatgattctcttatctgactttc 764

                                                                       
Query: 121 tgacactgtgggaagactatactggaatcttccacaagttcactaaggaaaggacctagg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 763 tgacactgtgggaagactatactggaatcttccacaagttcactaaggaaaggacctagg 704

                                                                       
Query: 181 gaggagcatggggactctgggaagtgtgccttggaaagagtgaccagtgggaggcgagtg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 703 gaggagcatggggactctgggaagtgtgccttggaaagagtgaccagtgggaggcgagtg 644

                                                                       
Query: 241 atgttatgggaacccagccttacctcatggctgtgaaggactttgcgggttccagaaggc 300
           | |  |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 643 aggagatgggaacccagccttacctcatggctgtgaaggactttgcgggttccagaaggc 584

                                                                       
Query: 301 tgtgggcagcacggagcttggcctacatggagatttacaatgggttcactctggttaatc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 583 tgtgggcagcacggagcttggcctacatggagatttacaatgggttcactctggttaatc 524

                                                                       
Query: 361 cagaggaagtgacctgggcaagaacagaggtcaccaggcagtcagggaggggaccagagc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 523 cagaggaagtgacctgggcaagaacagaggtcaccaggcagtcagggaggggaccagagc 464

                                                                       
Query: 421 cagcctgaaggagagcctaggggccccgggaagagctggggacggaagggagggaggggg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 463 cagcctgaaggagagcctaggggccccgggaagagctggggacggaagggaggga-gggg 405

                                                                       
Query: 481 gagaggaagccagacttggctgcagaccccccacccccaccaggaaatgcctcagcacca 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404 gagaggaagccagacttggctgcagaccccccacccccaccaggaaatgcctcagcacca 345

                                                         
Query: 541 cttctgaccccataggagctcctctgccaggcgggggtggggggcg 586
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 cttctgaccccataggagctcctctgccaggcgggggtggggggcg 299


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 586
Length of database: 985
Length adjustment: 10
Effective length of query: 576
Effective length of database: 975
Effective search space:   561600
Effective search space used:   561600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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