BAC Information

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BAC

Clone NameMSMg01-502L03
Chromosome8 (Build37)
Map Location 98,262,166 - 98,262,686
singlet/doubletsinglet
Overlap geneCnot1
Upstream geneCcl22, Cx3cl1, 1700121C10Rik, Ccl17, Ciapin1, LOC664947, Coq9, Polr2c, Dok4, LOC100040942, Ccdc102a, Gpr114, Gpr56, Gpr97, Gm770, Katnb1, Kifc3, BC016201, Map1lc3-ps6, 1700055M20Rik, Zfp319, AA960436, Mmp15, Gtl3, Csnk2a2, 4933406B17Rik, Ccdc113, 4931432M23Rik, EG546088, LOC100041040, Gins3, LOC547022, Ndrg4, Setd6
Downstream geneLOC100041953, LOC100041088, BC031853, LOC100041972, Got2, LOC667445
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-502L03.T7 (MSMg01no502_l03.b1)MSMg01-502L03.TJ (MSMg01no502_l03.g1)
ACCAG577989AG577990
length691733
length of high quality
(start - end)
332 (29 - 360)566 (75 - 640)
definitionCHROMAT_FILE: MSMg01no502_l03.b1 PHD_FILE: MSMg01no502_l03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:29:48 2005CHROMAT_FILE: MSMg01no502_l03.g1 PHD_FILE: MSMg01no502_l03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:29:48 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CGCTATACGACTCACTATTTCGAGAGGATCCGCGGAATTCCTTGTATGTC
AGTAGGGTGGCACACACCTGTGATCCCAGCATTTGGGGGGCCGAGGAAGG
AAGGGCACAGAGTTTAAGGTCAGCTACATAATATGACCGTGTCTCAAACA
AAAACCCAAGGGCTGAGAATGTAGATCAGGAGTAGAATCCTTACTTGTTA
GACACCAGGCTCTGGGTTCAAACCTTCCCACTGAAAAAAAGAAATTCCCT
CAACTGGGGAATCAGTTTACAAACTTGAAACCAGGCATGGCTGCACATGC
CTTTATTCCCAGAATTCAGGAAGGAGAGGCAAGCAAATCTCTGAGAGTTT
TATGTAGCCAGCCTGGTCTACATAGTGAGTTCCAGGCCAGCTGGAGATAC
ACACACACACACACACACACACACACACACACACACACACACACACACAC
ACACCTATAGAATGAGACCTATTCTCAAAACAGCATCTGCAAACAAAGAC
TTTCCGCGTTAATTAAAGAGAGGAAAGCCCCGTTTGTTTTGGGTTTTTCC
TCAAAGGGGGCCAACTCTAGTTGGGGGCTTTTTTTTTTTGGGGGGCGACA
ACAATAGAGCCCCTCGAAGTGTTTTCCCTTTTTTTCTGGGAAACACCCTT
CTCTTGGGGGGGTGTTTATTAAGGTGGTCTATAAAAAAAAG
CGATGCAGTGGGAGGCCTGGNGGCCGCCTGTTTTCGAAATATGGGGGTGA
ACTATAGAAGGTGCTGCAAAAGCCCTCCTTGGAGGGGGACTCATTTCAGC
CAGAAGGTGGCAGATTATCCCCATATTGATGCCACTATTGCACCGGTAGA
CATATCTTACTTGACTTAGAGCTTACATGGCTCACAGCTGAGTAGGGCCA
TAGAGAATTCCCTAGCAGCCTACAGATTAATTTCCTATGCTAAGAAAGCT
ACCTAGCAGAGGAGCTTGTTTTAGTTCAGTTCTAGCTTGTTGTTTGGTTT
GTTTTGCTTTTTTTTTTTCTTATTTTCTGTTCTACTGCTTGGCAGCTGTG
AGTAATTGCAGTAGCCTGTCTTGTTTTGAGGGGCTCTAAGACTTCCCTGA
ACAACAACCTGTTAGGGGGGTATCGAATGCGAATTTTGGTAACTAGGATA
TCATTTACTTACTAATGTTTAACACTGCCCATTCATTCAGTCTTAGTTTT
TCTCTTCCCGTCACCTCTCAGTGTGTATACACAAATTAAGTTTTGTTTGC
TTGTTTTTGTTTGTGTGTGTATTGTTTTTTGTTGTTGTTGTTGTATTTGA
GATTGGGTTTCATAGAGCTCAGAATCGTTTTGAACTCTGGACCCAAGGGT
GACTTTGCCCTCCTAATCTTCTGCCCCCACCTCCTTAGGGCCAGAATTAC
AAATATACACCACTGCACTTGGTTTATGAGGTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no502_l03.g1 MSMg01no502_l03.g1 CHROMAT_FILE:
MSMg01no502_l03.g1 PHD_FILE: MSMg01no502_l03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:29:48 2005
         (566 letters)



>mm_chr8_98261721_98262686
          Length = 966

 Score =  942 bits (487), Expect = 0.0
 Identities = 510/521 (97%), Gaps = 6/521 (1%)
 Strand = Plus / Minus

                                                                       
Query: 51  attgatgccactattgcaccggtagacatatcttacttgacttagagcttacatggctca 110
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 966 attgatgccactattgcaccggtagacatatcttacttgacttagagcttacatggctca 907

                                                                       
Query: 111 cagctgagtagggccatagagaattccctagcagcctacagattaatttcctatgctaag 170
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 906 cagctgagtagggccatagagaattccctagcagcctacagattaatttcctatgctaag 847

                                                                       
Query: 171 aaagctacctagcagaggagcttgttttagttcagttctagcttgttgtttggtttgttt 230
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 846 aaagctacctagcagaggagcttgttttagttcagttctagcttgttgtttggtttgttt 787

                                                                       
Query: 231 tgctttttttttttcttattttctgttctactgcttggcagctgtgagtaattgcagtag 290
           |||||||||||| ||  |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 786 tgctttttttttctcccattttctgttctactgcttggcagctgtgagtaattgcagtag 727

                                                                       
Query: 291 cctgtcttgttttgaggggctctaagacttccctgaacaacaacctgttaggggggtatc 350
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 726 cctgtcttgttttgaggggctctaagacttccctgaacaacaacctgttaggggggtatc 667

                                                                       
Query: 351 gaatgcgaattttggtaactaggatatcatttacttactaatgtttaacactgcccattc 410
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 gaatgggaattttggtaactaggatatcatttacttactaatgtttaacactgcccattc 607

                                                                       
Query: 411 attcagtcttagtttttctcttcccgtcacctctcagtgtgtatacacaaattaagtttt 470
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 attcagtcttagtttttctcttcccgtcacctctcagtgtgtatacacaaattaagtttt 547

                                                                       
Query: 471 gtttgcttgtttttgtttgtgtgtgtattgttttttgttgttgttgttgt------attt 524
           ||||||||||||||||||||||||||||| ||||||||||||||||||||      ||||
Sbjct: 546 gtttgcttgtttttgtttgtgtgtgtatttttttttgttgttgttgttgttgttgtattt 487

                                                    
Query: 525 gagattgggtttcatagagctcagaatcgttttgaactctg 565
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 gagattgggtttcatagagctcagaatcgttttgaactctg 446


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 566
Length of database: 966
Length adjustment: 10
Effective length of query: 556
Effective length of database: 956
Effective search space:   531536
Effective search space used:   531536
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)