BAC Information

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BAC

Clone NameMSMg01-502L15
Chromosome8 (Build37)
Map Location 63,658,614 - 63,658,831
singlet/doubletsinglet
Overlap genenone
Upstream geneAadat, Mfap3l, LOC100040679, 2700029M09Rik, Clcn3, B230317F23Rik, Nek1
Downstream geneSh3rf1, EG664975, Cbr4, Palld, LOC100040872, BC013672, Anxa10
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-502L15.T7 (MSMg01no502_l15.b1)MSMg01-502L15.TJ (MSMg01no502_l15.g1)
ACCAG578013AG578014
length717751
length of high quality
(start - end)
554 (70 - 623)224 (70 - 293)
definitionCHROMAT_FILE: MSMg01no502_l15.b1 PHD_FILE: MSMg01no502_l15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:29:50 2005CHROMAT_FILE: MSMg01no502_l15.g1 PHD_FILE: MSMg01no502_l15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:29:50 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTAATT
ATTTCTGCATTGTGCAGAATAGACAGTTGCCTCCTGGTGTTTAGCCATAG
CCTGTAAGAGGCTAGTGAATACAAACTGAAACACAGGTGAGTCTTCTTGT
TTCTGAGACAGTGATAGAATTTTTCCAGTATTTAAACATATTCATATGCC
CAGTTATATAACTCTAAGTATAAAACCATTTAGTAGGTTTGAGGCAACAT
GCTCATATTTATGGAAAGTAAAACATTACTAATTAAGTCCAATCCTATCT
TGAGAAAGGGACAGCAGTAATAGCAGGCAAACAACTGGAATTGTTGCTTT
AATAAAGACTGTACCCACTTTATGACAAGTCAGTTTTACTTAAATCAGGA
CTGTCCAACAAAAAACATTGTTAGCCATTCATGATCTGAAGTTGGTGTAT
GAATTAAATTATGTTATACATTAAAAGCCACGAGACATTTGAATTAAAAA
TGGGTGATATTGAGTAAGAAACTCATTGCTTCATCAATCCATACTCCATT
AGAATCATTTCTTTGGTGTGTTGTCACTGCCGTATCCATATATGGGGTGA
ATAAATACTTGTTTCCCTAAGAAAATTCACAGAACAAGGAAGGATCACTG
CCAACCGAAACAGAGTATTGTGAAAGCCGAAAGCATGGGAAGTTCACTGG
CTTGAGTGCTGACACAT
CGATGCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXTACTGCGAGATTCACTGGACGGAAGTGGGGATGGGTGTGTG
TGTGTGGGGGGAATTACTATATCAGCCCCTATGGGATAATTTGTGTAAGA
CCGGAGCCTAAGTCCATTGAGTTCTATCAGATACAGTAGGTCTGAGGCTC
TTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTT
TCTTTCTTTCTTTCTTTCTTTCTCTCTTTCTTTCTTTCTTTCTTTCGCAC
CCACGCTCTTTTTTTTTTTTTTACAAGCAGGCACACTTTCCTTCTTTCTT
TTTTTTTTTAGACCGGGTTCCTCTGTTTAGCCCTGGCTGTCCTGGAACTC
ACTTTGTACACCAGCTTGGTTTACTACTCACAAATCTGTTTGCCTCTGCC
TCCCACGTGTTGGGATTAAAGGCGTGTGCCTCCTCTCCCGGCTTGGCCCG
ATGCCCCCACCTTTGCCCTCTTTTCGCATCCTTTTTATCCTCCCATGAGC
TGCATTCTCTCTCCTTGTTTGTTCCTCGTTTTATCCTTTAGAGCTACGTC
TCTCCCCTTTTTCGTTTCCATTTTCATCCTGGCTTCCCGTCTGCTTTTTT
TTCCCGTACGAGCAACAACCGTCGTGTAATATTTGGGACTCTCGTCCTCC
TCCGTTTTCGCTCTTTTATCCACCGATGTCCCGCCTCGTTTCCTCCGTCT
C
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no502_l15.g1 MSMg01no502_l15.g1 CHROMAT_FILE:
MSMg01no502_l15.g1 PHD_FILE: MSMg01no502_l15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:29:50 2005
         (224 letters)



>mm_chr8_63658510_63659127
          Length = 618

 Score =  344 bits (178), Expect = 2e-99
 Identities = 211/224 (94%), Gaps = 6/224 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttcactggacggaagtggggatgggtgtgtgtgtgtggggggaattactatatcagcccc 60
           |||||||||||||||||||||||||||   | | ||  ||||||||||||||||||||||
Sbjct: 322 ttcactggacggaagtggggatgggtg---g-gggt--ggggaattactatatcagcccc 269

                                                                       
Query: 61  tatgggataatttgtgtaagaccggagcctaagtccattgagttctatcagatacagtag 120
           |||||||| |||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct: 268 tatgggatgatttgtgtaagacctgagccaaagtccattgagttctatcagatacagtag 209

                                                                       
Query: 121 gtctgaggctctttctttctttctttctttctttctttctttctttctttctttctttct 180
           |||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 208 gtctgaggttcttcctttctttctttctttctttctttctttctttctttctttctttct 149

                                                       
Query: 181 ttctttctttctttctttctttctctctttctttctttctttct 224
           |||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 148 ttctttctttctttctttctttctttctttctttctttctttct 105


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 82
Number of extensions: 29
Number of successful extensions: 29
Number of sequences better than 10.0: 1
Number of HSP's gapped: 28
Number of HSP's successfully gapped: 1
Length of query: 224
Length of database: 618
Length adjustment: 9
Effective length of query: 215
Effective length of database: 609
Effective search space:   130935
Effective search space used:   130935
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)