Query= MSMg01no505_f04.b1 MSMg01no505_f04.b1 CHROMAT_FILE:
MSMg01no505_f04.b1 PHD_FILE: MSMg01no505_f04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:33:12 2005
(672 letters)
>mm_chr8_113832192_113833263
Length = 1072
Score = 1162 bits (601), Expect = 0.0
Identities = 656/683 (96%), Gaps = 18/683 (2%)
Strand = Plus / Plus
Query: 1 tacttacagaaacatgg-ccaaa-gtgctctagcttgtatcatctagggttaagttatga 58
||||||||||||||||| ||||| ||||||||||||||||||||||| ||||||||||||
Sbjct: 186 tacttacagaaacatggcccaaatgtgctctagcttgtatcatctagagttaagttatga 245
Query: 59 agaataaaagcaacatgtagaggcagcagaaaaactcaaatgttac-------------t 105
|||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 246 agaataaaagcaacatgtagaggcagcagaaaaactcaaatgttactttgttgttgttgt 305
Query: 106 tgttgttgttgtttagagttcatggcaaaaacaactgatctttgaggtagaacagtacag 165
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 tgttgttgttgtttagagttcatggcaaaaacaactgatctttgaggtagaacagtacag 365
Query: 166 ctgagcaatctgtctttagtttcccaatagctctgctgtagctaacagctctgacctgac 225
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 ctgagcaatctgtctttagtttcccaatagctctgctgtagctaacagctctgacctgac 425
Query: 226 cggttggcttatgctaacagctgctgaggttttgtctcaggaacctgaaggcctcagagc 285
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 426 cggttggcttatgctaacagctgctgaggttttgtctcaagaacctgaaggcctcagagc 485
Query: 286 cttcagatgtcagatgggaaattcacacatgatgagagagtctggcagctctgctgatat 345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 cttcagatgtcagatgggaaattcacacatgatgagagagtctggcagctctgctgatat 545
Query: 346 aacatatcttgtttcttttttaaagaattatttgtttattttatgtattgtacattatag 405
||||||||| ||| ||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct: 546 aacatatct--ttt-tttttaaaagaattatttgtttattttatatattgtacattatag 602
Query: 406 ctgtcttcagacataccagtagagggcatccgatcccattacagatggttgtgagccacc 465
||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 603 ctgtcttcagacacaccagtagagggcatccaatcccattacagatggttgtgagccacc 662
Query: 466 atttggttgctgggaattgaactcaggccatctggaagagcagtcagtgctcttaatctc 525
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 663 atgtggttgctgggaattgaactcaggccatctggaagagcagtcagtgctcttaatcgc 722
Query: 526 tgagccatctctccagctcccacatatcttgtcttatttgctaccttaaccctcaggtca 585
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 723 tgagccatctctccagctcccacatatcttgtcttatttgctaccttaaccctcaggtca 782
Query: 586 gatgtctgctcagttctgcattgtacagaatgtacggcgtctgaaaatgttctacctgga 645
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 783 gatgtctgctcagttctgcattgtacagaatggacggcgtctgaaaatgttctacctgga 842
Query: 646 attataaggatgattccatataa 668
|||||||||||||||||||||||
Sbjct: 843 attataaggatgattccatataa 865
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 672
Length of database: 1072
Length adjustment: 10
Effective length of query: 662
Effective length of database: 1062
Effective search space: 703044
Effective search space used: 703044
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no505_f04.g1 MSMg01no505_f04.g1 CHROMAT_FILE:
MSMg01no505_f04.g1 PHD_FILE: MSMg01no505_f04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:33:12 2005
(586 letters)
>mm_chr8_113997246_113998231
Length = 986
Score = 1079 bits (558), Expect = 0.0
Identities = 579/586 (98%)
Strand = Plus / Minus
Query: 1 acaggcacccaagtcaagaatggcatagaataattgtggaggtaaattgtgggcacttgc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 786 acaggcacccaagtcaagaatggcatagaataattgtggaggtaaattgtgggcacttgc 727
Query: 61 ttatatttaaccactttcgatctaaaggtttcatgtggttcaatgtatttacgatgtcca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 726 ttatatttaaccactttcgatctaaaggtttcatgtggttcaatgtatttacgatgtcca 667
Query: 121 aaacagatgtcagttgttttgtggttaatttgcaaccaccgcacctctccctgaggcttc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 aaacagatgtcagttgttttgtggttaatttgcaaccaccgcacctctccctgaggcttc 607
Query: 181 ctcatgcagtaatgcagtagtctgtttaagcagagcaggctgacggagtggagcagtggg 240
||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||
Sbjct: 606 ctcatgcagtaatgcagtagtctctttaagctgagcaggctgacggagtggagcagtggg 547
Query: 241 agctttatgctctcctgtgtgtggcctcgccctcgatgtggaggccgacgagtccgtcct 300
||| ||||||||||||||||||||||||||||| |||||||||||| |||||||||||
Sbjct: 546 agccccatgctctcctgtgtgtggcctcgccctcgctgtggaggccgatgagtccgtcct 487
Query: 301 gaggactgttttctcctcaggaggcctgcatccgtattaccgaccacttttgctctggaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 gaggactgttttctcctcaggaggcctgcatccgtattaccgaccacttttgctctggaa 427
Query: 361 gtatttccagctaactgaaattttctgtgtccacatttttcttgtgtgcacttgacctct 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 gtatttccagctaactgaaattttctgtgtccacatttttcttgtgtgcacttgacctct 367
Query: 421 gcccctgagagtattcggagagggaggcagaaggaccgagatgggcctgcattaaggcct 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 gcccctgagagtattcggagagggaggcagaaggaccgagatgggcctgcattaaggcct 307
Query: 481 agcaaggagcaagtgcactgggctccccaggtctcgtgcagcctcctgcagaccatggtt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 agcaaggagcaagtgcactgggctccccaggtctcgtgcagcctcctgcagaccatggtt 247
Query: 541 tatttctcttgtgtttttaatctgcctgacttaggttgaatttgca 586
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 tatttctcttgtgtttttaatctgcctgacttaggttgaatttgca 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 586
Length of database: 986
Length adjustment: 10
Effective length of query: 576
Effective length of database: 976
Effective search space: 562176
Effective search space used: 562176
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
