BAC Information

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BAC

Clone NameMSMg01-506H02
Chromosome8 (Build37)
Map Location 4,190,367 - 4,190,971
singlet/doubletsinglet
Overlap geneB130050I23Rik
Upstream geneInsr, A430078G23Rik, Arhgef18, Pex11c, 1700019B03Rik, Zfp358, Mcoln1, Pnpla6, C330021F23Rik, 2310057J16Rik, Xab2, Pcp2, Stxbp2, Retn, 1810033B17Rik, LOC664858, Trappc5, Fcer2a, Clec4g, Cd209a, LOC664870, Cd209e, Cd209d, Cd209b, Cd209c, LOC664888, EG384770, EG664905, LOC664915, LOC664922, LOC631071, Cd209f, Cd209g
Downstream geneBC068157, Lrrc8e, Map2k7, LOC100039590, Snapc2, Ctxn1, Timm44, Elavl1, Ccl25, LOC664977, Ppia-ps8_36.1, Lass4, Vmn2r-ps89, EG633533, BC003267, LOC665021, EG623133, EG665044, EG623223, LOC100040234, Shcbp1, EG622568, LOC669393, EG631359, LOC100039687, LOC436026, Slc10a2, LOC434275
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-506H02.T7 (MSMg01no506_h02.b1)MSMg01-506H02.TJ (MSMg01no506_h02.g1)
ACCAG580838AG580839
length752755
length of high quality
(start - end)
535 (49 - 583)603 (82 - 684)
definitionCHROMAT_FILE: MSMg01no506_h02.b1 PHD_FILE: MSMg01no506_h02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:34:39 2005CHROMAT_FILE: MSMg01no506_h02.g1 PHD_FILE: MSMg01no506_h02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:34:39 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCCACTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTTAAAGGGTCAGTTGACTAGCAACTGGGATCCTTTTTTTTTT
TTTTTTTTTTTTTGATTTTTTTGAGACAGGGTTTCTCTGTATAGCCCTGG
CTGTCCTAAAACTCACTCTGTAGACCAGGCTGGCCTCGAACTCAGAAATT
CATCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGTTGTGCGGCACCACT
GCCAGGCTGCACTTTAAAGGATCCATCTTTAAAGGATCACCACTGGGGAT
CCTTTAAAGAGCCAGGCCCACAAGATAAATCAGACTCTATGGTCAAGGAG
TGAAATGTGAGGGTTTAGATGAATTGGCCCCATAGGGAGTGGCACTGTTA
GGAGGTGTGGCCTTGTTGGGAGTAGGTGTGGCTTTGTTGGAGGAAGTGTG
TCATTGGAGAGGGCTTTTAGGTCTAAAATCCTGGAGCCAGGTCCACTGTT
CTTTCTGTTCCCTGGAGATCTAGATGTAGAACTAAGTCTCAGCTATCTCT
TCAGCATCATGTCCACCTGCCTGCCACCATGTTTCCCACCAAGATGACAA
TGGATTAAACCTCTGAATTATAAGCCAGCTCCAGTTAAATGGTTTCCTTT
TTAAGAATTGTGTAAGGGATCTCTTCACAGCAATAGAAACCCTAAGACAA
AGGTAGAACCCTGGGGCTCCCTGGCCAGACTTAGGCTAATTAACAGGTTT
TA
TTTTTCGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGTTTGAACCCTCTGTATC
CATGTAAAAGCCTCATAGGCTCATAGGACGATATTCCTGCTACCCTCACA
CGGGGAGGCAGAGGCAGCAAGAGGGCAGAGTTAAGTAAATTCCTGGAGTT
TCCGGGCCAGCCAAATCAATGAACTACAGGTTCCATGAGAGGCATTGTTT
TAACAAATAGGTAAAAGACAGCTGGACATGGTAATAAACACTTTTAATCC
CAGCACTTGGGAGGCAGAGGCAACCAGATCACTGTGAGTTCATAAGCCAG
CCTGATCTCCATAGCAAGTTCCAAGCCATCCAATGCCACATAGTGAGATG
CTGCCTCATAAAGAAAGGTTGAGATTGAAGGAGACAGCAGCATCAACCTC
CGCACAGCCCCCTTACATATGCATTCACATATGAACACATACAAACCTCC
TACACATACCTACAGATAAAAAATAATTTGATCCCTAGCATCTGCCCCCC
TCAAAGTTAAGAAGGAATTACAACGCCAAGCCAGAAGACCGAAGACTTTC
ACAGGCTATGATTTACACACCCAAGCAGATGTGTAACCAAAAGCATAGAG
ATGCTGGCTAAAGGGGAAACCCAGAGTTCTGATGCTGCCTTCTCCAGCTT
CACCTTCCCCAGGGGTCTGCTGCTATCTAATAGCCTGAAGCTGAGGTCAT
CGCAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no506_h02.g1 MSMg01no506_h02.g1 CHROMAT_FILE:
MSMg01no506_h02.g1 PHD_FILE: MSMg01no506_h02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:34:39 2005
         (603 letters)



>mm_chr8_4190167_4191169
          Length = 1003

 Score = 1127 bits (583), Expect = 0.0
 Identities = 599/605 (99%), Gaps = 2/605 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgtttgaaccctctgtatccatgtaaaagcctcataggctcataggacgatattcctgct 60
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgtttgaaccctctgcatccatgtaaaagcctcataggctcataggacgatattcctgct 260

                                                                       
Query: 61  accctcacacggggaggcagaggcagcaagagggcagagttaagtaaattcctggagttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 accctcacacggggaggcagaggcagcaagagggcagagttaagtaaattcctggagttt 320

                                                                       
Query: 121 ccgggccagccaaatcaatgaactacaggttccatgagaggcattgttttaacaaatagg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccgggccagccaaatcaatgaactacaggttccatgagaggcattgttttaacaaatagg 380

                                                                       
Query: 181 taaaagacagctggacatggtaataaacacttttaatcccagcacttgggaggcagaggc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 taaaagacagctggacatggtaataaacacttttaatcccagcacttgggaggcagaggc 440

                                                                       
Query: 241 aaccagatcactgtgagttcataagccagcctgatctccatagcaagttccaagccatcc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaccagatcactgtgagttcataagccagcctgatctccatagcaagttccaagccatcc 500

                                                                       
Query: 301 aatgccacatagtgagatgctgcctcataaagaaaggttgagattgaaggagacagcagc 360
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agtgccacatagtgagatgctgcctcataaagaaaggttgagattgaaggagacagcagc 560

                                                                       
Query: 361 atcaacctccgcacagcccccttacatat--gcattcacatatgaacacatacaaacctc 418
           |||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||
Sbjct: 561 atcaacctccgcacagcccccttacatatatgcattcacatatgaacacatacaaacctc 620

                                                                       
Query: 419 ctacacatacctacagataaaaaataatttgatccctagcatctgcccccctcaaagtta 478
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ctacacatacttacagataaaaaataatttgatccctagcatctgcccccctcaaagtta 680

                                                                       
Query: 479 agaaggaattacaacgccaagccagaagaccgaagactttcacaggctatgatttacaca 538
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 agaaggaattacaatgccaagccagaagaccgaagactttcacaggctatgatttacaca 740

                                                                       
Query: 539 cccaagcagatgtgtaaccaaaagcatagagatgctggctaaaggggaaacccagagttc 598
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 cccaagcagatgtgtaaccaaaagcatagagatgctggctaaaggggaaacccagagttc 800

                
Query: 599 tgatg 603
           |||||
Sbjct: 801 tgatg 805


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 603
Length of database: 1003
Length adjustment: 10
Effective length of query: 593
Effective length of database: 993
Effective search space:   588849
Effective search space used:   588849
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)