Query= MSMg01no506_m21.b1 MSMg01no506_m21.b1 CHROMAT_FILE:
MSMg01no506_m21.b1 PHD_FILE: MSMg01no506_m21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:35:07 2005
(720 letters)
>mm_chr8_125102019_125103137
Length = 1119
Score = 1187 bits (614), Expect = 0.0
Identities = 666/698 (95%), Gaps = 25/698 (3%)
Strand = Plus / Plus
Query: 23 cacctcacagagaaaccctgtctcaaaccaaccaaccaacccaaaaatagacttggggct 82
|||||||| |||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 231 cacctcactgagaaaccctgtctcaaaccaacc--------caaaaatagacttggggct 282
Query: 83 accagagctaacccccctcctgttcctttattcttcctctcagtctcttcaccatcattt 142
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283 accagagctaaccccc-tcctgttcctttattcttcctctcagtctcttcaccatcattt 341
Query: 143 cccaaccgttacagctcaaccttggctctgcagttactgcacagatgtgaaaacttgtcc 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 cccaaccgttacagctcaaccttggctctgcagttactgcacagatgtgaaaacttgtcc 401
Query: 203 atggcggacagctcccatgagccttcagagaaagggtcttggagattatgtggagcacat 262
||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct: 402 atg----------------agccttcagagaaagggtcttggagattatgtggagcatat 445
Query: 263 gagaggtggcaggttacagaagtggccccatactgccctgagccagggccagaaacttag 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 gagaggtggcaggttacagaagtggccccatactgccctgagccagggccagaaacttag 505
Query: 323 gctgtcatcttcccatctccatggggcagtgcagatgccaccttgactggaaaaggtgct 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 gctgtcatcttcccatctccatggggcagtgcagatgccaccttgactggaaaaggtgct 565
Query: 383 gtctttgtcttttgtttgtagccagtgcaaaagaggtagggtggctcagagggttggcct 442
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 566 gtctttgtcttttgtttgtagccagtgcgaaagaggtagggtggctcagagggttggcct 625
Query: 443 gggggagaagccagatagatggcacttccttggcatttcgctgaaatcttcacttttgtg 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 gggggagaagccagatagatggcacttccttggcatttcgctgaaatcttcacttttgtg 685
Query: 503 tacgacacctaggttgaaatgtatgcagggacagtgacagtgcttcagaccctgggctgg 562
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 686 tacggcacctaggttgaaatgtatgcagggacagtgacagtgcttcagaccctgggttga 745
Query: 563 cgtacctacggtgatcaaggccccggcttccttttcaggagccagttggcaagatgggct 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 746 cgtacctacggtgatcaaggccccggcttccttttcaggagccagttggcaagatgggct 805
Query: 623 gtggtgctcgagagcggactacagggtcagggctccaggatgagcagtcttggagccttg 682
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 806 gtggtgctcgagagcggactacagggtcagggctccaggatgagcagtcttggagccttg 865
Query: 683 cacctggttgcaggggccgtccatgcatggatgggtgg 720
||||||||||||||||||||||||||| ||||||||||
Sbjct: 866 cacctggttgcaggggccgtccatgcagggatgggtgg 903
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 720
Length of database: 1119
Length adjustment: 10
Effective length of query: 710
Effective length of database: 1109
Effective search space: 787390
Effective search space used: 787390
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no506_m21.g1 MSMg01no506_m21.g1 CHROMAT_FILE:
MSMg01no506_m21.g1 PHD_FILE: MSMg01no506_m21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:35:07 2005
(632 letters)
>mm_chr8_125273410_125274435
Length = 1026
Score = 1160 bits (600), Expect = 0.0
Identities = 622/632 (98%), Gaps = 6/632 (0%)
Strand = Plus / Minus
Query: 1 tcagaagtaaactttggggcactggtgctaacccagtctgatctagctctgggcccagtt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 826 tcagaagtaaactttggggcactggtgctaacccagtctgatctagctctgggcccagtt 767
Query: 61 gatgataaggacctgtttggttgatagtgctctgggtagcacctctggctctggggacca 120
||||||||||||||||||||||||||||||||||||||||||||||| |||| |||
Sbjct: 766 gatgataaggacctgtttggttgatagtgctctgggtagcacctctg-----gggg-cca 713
Query: 121 ggtggatatagtagaatgggcgggagtcataaggagctagaactggctgtgtagacttta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 712 ggtggatatagtagaatgggcgggagtcataaggagctagaactggctgtgtagacttta 653
Query: 181 ttcactgagtccgggttcactcagctaggcaagttgtcattggtcttatatccgctggca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 652 ttcactgagtccgggttcactcagctaggcaagttgtcattggtcttatatccgctggca 593
Query: 241 agggaacatgctggcctggtttagaatccctggtctgagtacccagggatcttcaggtgg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 592 agggaacatgctggcctggtttagaatccctggtctgagtacccagggatcttcaggtgg 533
Query: 301 ttctagctgtccactgaggccccgtggcccttaccctacagccttagtccacaacacaaa 360
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 532 ttctagctgtccactgaggccccatggcccttaccctacagccttagtccacaacacaag 473
Query: 361 catgctttttagaagtgagaccctggataccgactgggccttcccctagctccaggctgg 420
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 472 catgctttttagaagagagaccctggataccgactgggccttcccctagctccaggctgg 413
Query: 421 tataggtagcatgcctgtctgccttgccatctctgcctatggagagtattggcttgtctc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 412 tataggtagcatgcctgtctgccttgccatctctgcctatggagagtattggcttgtctc 353
Query: 481 cagtatggaagttcctggggatcctctcacccagagttgctgtggcctgacctggagggt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 cagtatggaagttcctggggatcctctcacccagagttgctgtggcctgacctggagggt 293
Query: 541 aggtatagggggttgagttccccatgcagaacaagtctgttgttgatgctactagagata 600
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 292 agatatagggggttgagttccccatgcagaacaagtctgttgttgatgctactagagata 233
Query: 601 aaaagacagccgggctggggggccctctgggt 632
||||||||||||||||||||||||||||||||
Sbjct: 232 aaaagacagccgggctggggggccctctgggt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 632
Length of database: 1026
Length adjustment: 10
Effective length of query: 622
Effective length of database: 1016
Effective search space: 631952
Effective search space used: 631952
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
