BAC Information

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BAC

Clone NameMSMg01-507C12
Chromosome8 (Build37)
Map Location 71,970,728 - 71,971,330
singlet/doubletsinglet
Overlap geneLOC670593
Upstream gene4732435N03Rik, Ints10, Lpl, LOC100041138, Slc18a1, Atp6v1b2, Lzts1, EG665540, D10627, LOC665553, D130040H23Rik, LOC665561
Downstream geneEG665578, LOC622336, LOC100041482, LOC673968, AI449175, EG636741, 1200003I07Rik, D330038O06Rik, Atp13a1, Gmip, Edg4, Pbx4, Cilp2, BC028663, Ndufa13, Tssk6, Gatad2a, LOC665649, 9130404D08Rik, Sf4, Tm6sf2, Hapln4, Ncan, Rfxank, 2310073E15Rik, 2310045N01Rik, Mef2b, Tmem161a, Slc25a42, Armc6, Sfrs14, Homer3, Ddx49, Cope, Lass1, Upf1, Comp, Crtc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-507C12.T7 (MSMg01no507_c12.b1)MSMg01-507C12.TJ (MSMg01no507_c12.g1)
ACCAG581375AG581376
length775780
length of high quality
(start - end)		659 (51 - 709)595 (75 - 669)
definitionCHROMAT_FILE: MSMg01no507_c12.b1 PHD_FILE: MSMg01no507_c12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:35:35 2005CHROMAT_FILE: MSMg01no507_c12.g1 PHD_FILE: MSMg01no507_c12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:35:36 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
NNNTTCTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCATTGATAATGACCAGGACATTAATGACAACCCTCCAGAGT
TTCTGCATGAAATCTATCATACCAATGTGCCTGAGAGGTCCAATGTGGGT
AGGTAAGTAATGGTCACCTATTCTCTTTCTATCTGGTATGTCTGCAGGTT
GACAGGCTGGTGCCTGCCCTTCAACCCAGGAAGCAGAGCTTGTGTTCAAT
CATTATTGCACATTAATAAGGAAAAAATGCTTTGTTAGATTCTTAACAAT
TAAATAGTTTTCTTTTCCTCGCACAAAATATCATGATTATGGCTTCTGCT
CTTTCCACCCCTCTCAGTTACTCCACACATCCCCTGCCATCCAGATGCAC
CCTTTCTTTTCAGTCTCCATAGTAAACAATCAGACTCCTAAAAGATAGTG
AGAAAAGAATATATAAGATTAAAAAAAAAGAAAACCCTAACACATTGAAC
AAAAGAAACAAACAGAAAGGAAGGGACTCCAAGGAAAAGTGCATAACAGA
TATAGAGACTCAGGTTTTCAAATGTTTATATTAGACTTGAGGCTCTAAAG
TCGACTATTAACTTCCTATTAACTAGGAAGTCTGGAAGGGGGAAGAATGA
GATTCAGTTTAGCAAATCCTGACTTATGTTCAGCTGTGTGAAGTGACACC
ATTTAATATTTGCTCTTCCTCTGTAGAAGAGCAATAACAATTCCAGTCTT
CNAAGAGTAATGATTATATTCATCC

NCAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXACTTTTCAGCAATTGACTATGATTGC
TGACTGCTCTCCTCCCACCTTTTCTCAAGAGAAAATATGAGGAATACTTA
GCTCTTAATTAAAACACAAACAAAGGTGCACGCGCACGCAAACACACACA
CACACACACACACACACACTAAAAAGAATTAAAGACAAGATCGGGCATGC
TCAGGGTGGTTTGGCTGTAGACACTTATGGAAGTCTAAAAGGAAGGATTC
CAGGCCTGAAGGAGATAGGAACTCTTGAGAATGACCAACCACCAGAATCA
AATAACATGAACCCTCAGGGCACTCAGAGATGGAACAATGAAACAAAGAA
CAAACATGGGTTGGACGGATATCTCCGAGCACCTATGTAGCAGAGGGGCA
GCTAGGTCTTCACATGGGTCCCAATCAACTGGAATGGGGGTATCAAAAAA
AGCTGTTCATCCTACCTCAGTTTTATTCTTCTAGCTGAGCTACTTTTTCT
GTCCTCAGAGAGAGACGAAGTGCCAGGGTTTGGACATACAGGGAGTCCCA
AACTGCTCAAAGGTGAAGTGGAGGAGGGGCAGGGAGAGACTGTGGGACTG
GGTGACCAGGAGGGGGTCACTGAGCTAGATGTAAACATAAGAAAAAAATT
TAATTAAATTTTTACAGAAATCATTAAAGTTTTGAAATGTATCTTCTATC
ACAGAAAGAACTGTTATTTGGGAATAATGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no507_c12.g1 MSMg01no507_c12.g1 CHROMAT_FILE:
MSMg01no507_c12.g1 PHD_FILE: MSMg01no507_c12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:35:36 2005
         (595 letters)



>mm_chr8_71970528_71971522
          Length = 995

 Score = 1038 bits (537), Expect = 0.0
 Identities = 583/603 (96%), Gaps = 8/603 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   acttttcagcaattgactatgattgctgactgctctcctcccaccttttctcaagagaaa 60
           |||||||||||||||||||||||||||||||||||  |||||||||||||||||||| ||
Sbjct: 201 acttttcagcaattgactatgattgctgactgctcagctcccaccttttctcaagaggaa 260

                                                                       
Query: 61  atatgaggaatacttagctcttaattaaaacacaaacaaaggtgcacgcgcacgcaaaca 120
           |||||||||||||||||||||||||||||||||||||||| |||||| | ||||||||||
Sbjct: 261 atatgaggaatacttagctcttaattaaaacacaaacaaaagtgcacacacacgcaaaca 320

                                                                       
Query: 121 cacacacac--------acacacacacacacactaaaaagaattaaagacaagatcgggc 172
           |||||||||        |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cacacacacaaacacaaacacacacacacacactaaaaagaattaaagacaagatcgggc 380

                                                                       
Query: 173 atgctcagggtggtttggctgtagacacttatggaagtctaaaaggaaggattccaggcc 232
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atgctcagggtggtttggctgtagacacttatggaagtctaaaaggaaggattccaggcc 440

                                                                       
Query: 233 tgaaggagataggaactcttgagaatgaccaaccaccagaatcaaataacatgaaccctc 292
           ||||||||||||||||||  ||| ||||||||| ||||||||||||||||||||||||||
Sbjct: 441 tgaaggagataggaactccagaggatgaccaactaccagaatcaaataacatgaaccctc 500

                                                                       
Query: 293 agggcactcagagatggaacaatgaaacaaagaacaaacatgggttggacggatatctcc 352
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agggcactcagagatggaacaatgaaacaaagaacaaacatgggttggacggatatctcc 560

                                                                       
Query: 353 gagcacctatgtagcagaggggcagctaggtcttcacatgggtcccaatcaactggaatg 412
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gagcacctatgtagcagaggggcagctaggtcttcacatgggtcccaatcaactggaatg 620

                                                                       
Query: 413 ggggtatcaaaaaaagctgttcatcctacctcagttttattcttctagctgagctacttt 472
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ggggtatcaaaaaaagctgttcatcctacctcagttttattcttctagctgagctacttt 680

                                                                       
Query: 473 ttctgtcctcagagagagacgaagtgccagggtttggacatacagggagtcccaaactgc 532
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 681 ttctgtcctcagagagagacgaagtgccagggtttggacatacatggagtcccaaactgc 740

                                                                       
Query: 533 tcaaaggtgaagtggaggaggggcagggagagactgtgggactgggtgaccaggaggggg 592
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tcagaggtgaagtggaggaggggcagggagagactgtgggactgggtgaccaggaggggg 800

              
Query: 593 tca 595
           |||
Sbjct: 801 tca 803


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 595
Length of database: 995
Length adjustment: 10
Effective length of query: 585
Effective length of database: 985
Effective search space:   576225
Effective search space used:   576225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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