NATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCATCACCCTTGTCCCTACATCTAATATATATGTATATGTATATATA
CATATCATATACATATACACACACACATACACACACACATACACACACAT
ATACACACACATACATACATACACACACACACAAATAAATTTAAATAGAA
ACAAAATAAAATTTTGATTTTCTTTTACCTATAAAATGATGATTTAGTAT
AGGTCAACAACATATATTAAGTTTTAGTTATAAGCCATATAATTATAAAG
ATTAAAAAAATTGTTATGAGAACACAAAGAAGCAACTCATTCATTCTGTT
GGAACAAATCTATGAGGAGGCTGGGCTTCAGGCTCAGTTTTCCACATTTG
AGCTGTTAAGAGGCTAATCAAAGAATTTTCAGCTAAACAAATAAAGACCA
CTCCATGGAAATGGAACAGAATGAGGGAAAGAGATGGAAACTAAATGAGG
AGCACTCATGGCGCCAAAGGACTTTATTTTCTCTTCGTAGTAATGTTCAA
TAACAATATTATTTTAATTAAAAAATGTTCTGTATTCTTTGCATTCTTTC
CTGAGTGGCTTTTAAGTATTTAGTAAATATTCCAATACTAGGAAGACTAT
GATAAATATCAGTGCATGACTACTTCCCACGAGGATATGCCTATACAAAT
GGGATGTAAGAATAAACATCATTGCCAGGCGGTGCTGGCACACACCTTTA
ATCCCAGCACTTGGGAGGCA

CCGATGATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTTCCGGGATCCCGATAGGCGTGGCCC
CTGGGGGGTTCCAGGTAGAATATGTTTCTGGGTAATGGGAGACACATAGG
CATGGGGACAGGCCAGGAGGACTGTAGAGATCCACAGGAGGGAGAAGAGA
AGGGGGTGTTCCAGCAGGATCTACTTAGTCCCCTGGGAGTGGGAACACAG
AGTGAGGGGAGGCCGAAGCTCATGGTCTCTGACAGAACTGAGCTGAGACT
GGGGGATTGGGCTTGAGGAATGGAGGGAGAAGTGAAGGTCTCCAGTTAGC
CTACTTGCTTCCCTGGCCAGTGTGGCTTGTGGGTTCCTAGGGAGTGCCTG
CAGGACTTGGAGGCTGGGATGGTGCAATGGTCAGTGATCGGGAAGAAGGG
ACCTTAGAGGGGAAGATTGGTGCGATTCACAGAAGGGGAGGAGGAAGAGG
AGGCCGTAGCAGGTGTTTTCCTGCAGATGTGGCAACTGGAGGAATGGATT
TGGAGGATCATAGAGAGAGGTGAAGATTCAAAGTTAGCCTACCTGCTTCC
GTGGCTGGGGTGCTTAATAGAACATCTTTATTTTTTCAGAAGTAATTATG
GAAATATATAAGTTGATAAGTAGAGATGCAACCATTTTAGTTAAGGCCAT
CTTACTCTCACTTGAATTATTTTATTTTTCTCTTGGTTTCCCGGAGGCCT
GGCTGGGTGTTTATAGCACATAA

Query= MSMg01no507_e14.b1 MSMg01no507_e14.b1 CHROMAT_FILE:
MSMg01no507_e14.b1 PHD_FILE: MSMg01no507_e14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:35:46 2005
         (682 letters)



>mm_chr8_111809927_111811006
          Length = 1080

 Score = 1207 bits (624), Expect = 0.0
 Identities = 661/680 (97%), Gaps = 16/680 (2%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcatcacccttgtccctacatctaatatatatgtatatgtatatatacatat-cat 63
           |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 829 gaattcatcacccttgcccctacatctaatatatatgtatatgtatatatacatatacat 770

                                                                       
Query: 64  atacatatacacacacacatacacacacacatacacacacatatacacacacatacatac 123
           ||||    ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 769 atac----acacacacacatacacacacacatacacacacatatacacacacatacatac 714

                                                                       
Query: 124 at----acacacacacacaaataaatttaaatagaaacaaaataaaattttgattttctt 179
           ||    ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 713 atacacacacacacacacaaataaatttaaatagaaacaaaataaaattttgattttctt 654

                                                                       
Query: 180 ttacctataaaatgatgatttagtataggtcaacaacatatattaagttttagttataag 239
            |||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||
Sbjct: 653 ctacctataaaatgatgatttagtataggtcaacaacatatatt--gttttagttataag 596

                                                                       
Query: 240 ccatataattataaagattaaaaaaattgttatgagaacacaaagaagcaactcattcat 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 595 ccatataattataaagattaaaaaaattgttatgagaacacaaagaagcaactcattcat 536

                                                                       
Query: 300 tctgttggaacaaatctatgaggaggctgggcttcaggctcagttttccacatttgagct 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 535 tctgttggaacaaatctatgaggaggctgggcttcaggctcagttttccacatttgagct 476

                                                                       
Query: 360 gttaagaggctaatcaaagaattttcagctaaacaaataaagaccactccatggaaatgg 419
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 475 gttaagaggctaatcaaagaattttcagataaacaaataaagaccactccatggaaatgg 416

                                                                       
Query: 420 aacagaatgagggaaagagatggaaactaaatgaggagcactcatggcgccaaaggactt 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 415 aacagaatgagggaaagagatggaaactaaatgaggagcactcatggcgccaaaggactt 356

                                                                       
Query: 480 tattttctcttcgtagtaatgttcaataac----aatattattttaatt-aaaaaatgtt 534
           ||||||||||||||||||||||||||||||    ||||||||||||||| ||||||||||
Sbjct: 355 tattttctcttcgtagtaatgttcaataacaattaatattattttaattaaaaaaatgtt 296

                                                                       
Query: 535 ctgtattctttgcattctttcctgagtggcttttaagtatttagtaaatattccaatact 594
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 295 ctgtattctttgcattctttcctgagtggcttttaagtatttagtaaatattccaatact 236

                                                                       
Query: 595 aggaagactatgataaatatcagtgcatgactacttcccacgaggatatgcctatacaaa 654
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 235 aggaagactatgataaatatcagtgcatgactacttcccacgaggatatgcctatacaaa 176

                               
Query: 655 tgggatgtaagaataaacat 674
           ||||||||||||||||||||
Sbjct: 175 tgggatgtaagaataaacat 156


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 46
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 682
Length of database: 1080
Length adjustment: 10
Effective length of query: 672
Effective length of database: 1070
Effective search space:   719040
Effective search space used:   719040
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)