BAC Information

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BAC

Clone NameMSMg01-507H19
Chromosome8 (Build37)
Map Location 115,759,549 - 115,760,231
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042040, Cntnap4, LOC100042061
Downstream geneMon1b, 4930481F22Rik, Adamts18, Nudt7, AI427515
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-507H19.T7 (MSMg01no507_h19.b1)MSMg01-507H19.TJ (MSMg01no507_h19.g1)
ACCAG581625AG581626
length7221,612
length of high quality
(start - end)		687 (36 - 722)---
definitionCHROMAT_FILE: MSMg01no507_h19.b1 PHD_FILE: MSMg01no507_h19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:36:03 2005CHROMAT_FILE: MSMg01no507_h19.g1 PHD_FILE: MSMg01no507_h19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:36:03 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCATCAC
ACACTTCCCCATTTGAGACTTGTCATACAAAATAAATGTCCAGTCCTCTT
TAAATATGTCCATGTCATGAACACTAAAGACCCAGATGTTACCACAAATG
AGAAAAGACGTGGAAATCAAGTTGAATAAAAGACGATGGTTGGGATCTTA
GAAAAAGCAACACTAAACTAAAGACCCGTACATTTGTAGGAACCCAGGTT
TGTCAGTTAGTCATGCTGTGAACACCACGCAAGCTTTGAGGTTGAGGTGA
TACCTCTGGACTAATAATTAGTTCTTCATCATGGCATTTCTAGTACAGTA
AAAACACAAAAGGAGAAAAAGGGCTGGGCATAGAATCTGCAGCAATTATT
GGTAGCAATTATTATTTGTGATTTTGGAGAATATAGTGTTACCAAGGTTT
TATAAGCCTACTGGTCAAATCCAATCCCAGCCTGCTCCAGTAAATAACAT
TTTACTGGAACCCAAGTATATCCATACATTCTTTCCTATGTTATCTATAG
CTGCTTCTGAGACAGAAAGGCAAAGATATATTGTTGCAACAGGGACTGTT
CATATGACCAGCAGAGCCTAGAATATTTACTGCCTGGTCCTCCGCAGAGG
ACCTGTGGCAGTGTGTGTATTTCATCGAGTGTTAATGCTTGGGCATTACC
TTGGAGCTCTGAAATGAGAGGA

TTCTAAAGATTTACAGTAGAATAGGAGTAAGGCGATGTGGACAGCAGAGG
AATAGAANGTCTTCTTCACTATTAGAGGGAGGGTGGGATATGTATCNTGC
CAGAGGGCACCTACACCGTAGACAGCCTATGCGAGCGAATGCATACGACT
CTACTGCTGGCCTACATGGTAGTTCCATGCCTCGATTACTATATTAATGA
TTATGTGCCGGTGTGTACGCGGGAGCTGCACACACAGCTGACTCACCTAC
CCCATGAGACAACAGAGCGACGCTTGAAAGTCCGTCCGTCATGAACGTGG
CTATGGCGGCGTTGTACGCGACTGATTCGAACACTCTCGATCAGGTGTTA
TTCTACAGTACGCGCTACAAACTAAGCGTGAGAGAGAGTAAGATGTATGA
TAGGTGAGCGTGGAGCACTTAGAGCCTACTATATCGAATAGAGATAACGA
ATGACCGTATCTCACTTCTCGATGATACTTGTCTGGACAGCTCGCGATAT
ATAATAGNGCCTCTTGTGATATATCTTCGACTTGCGCCATCTCTTCGCTA
TCAAGACTCCTCCGCACCGATATCCTTCTCCCTCCTCGACGTGCCGACAC
ATTTCTGCCTATTAGCTCCTCTCCTTGTTATCNTCCCAGTACGCAACTCT
CGCATAGACCATCAATGAGCACGTCCTGCCACTATTGCAACACGATGCGA
GTGTTGCCGCCGCGAGGCAGACGTCTATGTTGTCGACGTGTCTATTACGT
CCTACGATACTTACATGTGTCAATTTGCATGACTGGTCATGGCATGACAC
GACATCGAATAGACACTGGGACATTATGTGCGGTCAGTTGTGATCGCACC
GAACGCAGGTTGTCGATACGTCGTCGTCATGTCACTGTTCAGNCTCGCCG
ACCGTATCACAGCTAGCATGTATGACTACACGAGACATAAGAGGGCATCG
CTATTCTCATACGCATTACACTGTTGACCACGACTCACTATCGATCGTAA
CATGTAGCGACGCGGAATGCAGTCGCGCGTACTAGTGTGTGTTCGTCTAC
TGCACTGCGACGCGCGCGTCTCTGAGTGCGCGCTGAAGTTGGCGCGCGTC
TGATCAGATACGCGCCTGTGACACATCCCAGAGGTATATCTCACTACGAA
CTATAACATCGATAAGAGACCACACCACACTGTCGTAGTGACTGATGAAC
ATGATGCTGTTTCGGATACGGTGCTGGTTATAGCATGCGACGACGATCAG
ACACGCTAGATGTGCCGTACCCGATCGCTTAGTATCANCATAGTCGCGAC
TATCATGAAGATTCAGAAGTGTACATGACTGAGCGNCGTANTACATGGCA
CATCCCTGCGCGCGTGTGTTCGATCACGTCAACGACGCGAATGATAAGTA
TCTATAGACNGTCATACGCTATGCTANACTGTGATATGTAGATTCACTTG
CTCTATGTATGAGATAACTCATACTTATCTGCCATCACGCGCNTGAGCAC
GTNGCGTCTATCGAGTGATATGGAGTCGCATCGGACAGTAGCTGCGGCAC
NATGCATTCATGTGAGTTCAGCGCTGATACTCTATCGTCGTGTGCATGGT
ACGCATGCCTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no507_h19.b1 MSMg01no507_h19.b1 CHROMAT_FILE:
MSMg01no507_h19.b1 PHD_FILE: MSMg01no507_h19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:36:03 2005
         (687 letters)



>mm_chr8_115759225_115760311
          Length = 1087

 Score = 1305 bits (675), Expect = 0.0
 Identities = 681/683 (99%)
 Strand = Plus / Minus

                                                                        
Query: 5    gaattcatcacacacttccccatttgagacttgtcatacaaaataaatgtccagtcctct 64
            ||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1007 gaattcatcacacacatacccatttgagacttgtcatacaaaataaatgtccagtcctct 948

                                                                        
Query: 65   ttaaatatgtccatgtcatgaacactaaagacccagatgttaccacaaatgagaaaagac 124
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 947  ttaaatatgtccatgtcatgaacactaaagacccagatgttaccacaaatgagaaaagac 888

                                                                        
Query: 125  gtggaaatcaagttgaataaaagacgatggttgggatcttagaaaaagcaacactaaact 184
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 887  gtggaaatcaagttgaataaaagacgatggttgggatcttagaaaaagcaacactaaact 828

                                                                        
Query: 185  aaagacccgtacatttgtaggaacccaggtttgtcagttagtcatgctgtgaacaccacg 244
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 827  aaagacccgtacatttgtaggaacccaggtttgtcagttagtcatgctgtgaacaccacg 768

                                                                        
Query: 245  caagctttgaggttgaggtgatacctctggactaataattagttcttcatcatggcattt 304
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 767  caagctttgaggttgaggtgatacctctggactaataattagttcttcatcatggcattt 708

                                                                        
Query: 305  ctagtacagtaaaaacacaaaaggagaaaaagggctgggcatagaatctgcagcaattat 364
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 707  ctagtacagtaaaaacacaaaaggagaaaaagggctgggcatagaatctgcagcaattat 648

                                                                        
Query: 365  tggtagcaattattatttgtgattttggagaatatagtgttaccaaggttttataagcct 424
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 647  tggtagcaattattatttgtgattttggagaatatagtgttaccaaggttttataagcct 588

                                                                        
Query: 425  actggtcaaatccaatcccagcctgctccagtaaataacattttactggaacccaagtat 484
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 587  actggtcaaatccaatcccagcctgctccagtaaataacattttactggaacccaagtat 528

                                                                        
Query: 485  atccatacattctttcctatgttatctatagctgcttctgagacagaaaggcaaagatat 544
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 527  atccatacattctttcctatgttatctatagctgcttctgagacagaaaggcaaagatat 468

                                                                        
Query: 545  attgttgcaacagggactgttcatatgaccagcagagcctagaatatttactgcctggtc 604
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 467  attgttgcaacagggactgttcatatgaccagcagagcctagaatatttactgcctggtc 408

                                                                        
Query: 605  ctccgcagaggacctgtggcagtgtgtgtatttcatcgagtgttaatgcttgggcattac 664
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 407  ctccgcagaggacctgtggcagtgtgtgtatttcatcgagtgttaatgcttgggcattac 348

                                   
Query: 665  cttggagctctgaaatgagagga 687
            |||||||||||||||||||||||
Sbjct: 347  cttggagctctgaaatgagagga 325


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 687
Length of database: 1087
Length adjustment: 10
Effective length of query: 677
Effective length of database: 1077
Effective search space:   729129
Effective search space used:   729129
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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