Query= MSMg01no507_k04.b1 MSMg01no507_k04.b1 CHROMAT_FILE:
MSMg01no507_k04.b1 PHD_FILE: MSMg01no507_k04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:36:14 2005
(689 letters)
>mm_chr8_48623201_48624289
Length = 1089
Score = 801 bits (414), Expect = 0.0
Identities = 426/430 (99%)
Strand = Plus / Minus
Query: 260 agaactgggcacaagtgtcctttttctctgcttccggactttgggtacaatatgaccgca 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 1075 agaactgggcacaagtgtcctttttctctgcttccggactttgggtacaatatgaccaca 1016
Query: 320 gcctcacacaggatcctactgcctcaacttccctgccactgataacctggacctttcaaa 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1015 gcctcacacaggatcctactgcctcaacttccctgccactgataacctggacctttcaaa 956
Query: 380 ctgggagccaaaacggtcttccttcctttttaaaaaaaaatatttatttattattattta 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 955 ctgggagccaaaacggtcttccttcctttttaaaaaaaaatatttatttattattattta 896
Query: 440 ttattactgtatatatgtgatttgtgtagaggaacaaaagtcccacggtgcacagaggac 499
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 895 ttattactgtatatatgtgatttgtgtagaggaacaaaagtcccacagtgcacagaggac 836
Query: 500 aacttcaaggactgagaatcggttttatcaccccacctttgtgtggattctgggaaccag 559
|||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct: 835 aacttcaaggactgagaatcggttttatcatcccacttttgtgtggattctgggaaccag 776
Query: 560 ctcaggctttggggcttgagtagtgaatgttttttgttctcgggccctcaggaatttggt 619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 775 ctcaggctttggggcttgagtagtgaatgttttttgttctcgggccctcaggaatttggt 716
Query: 620 cacagcaataagcatggttacacagatagaggcaggacaaaggcagcggggcatgaaggg 679
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 715 cacagcaataagcatggttacacagatagaggcaggacaaaggcagcggggcatgaaggg 656
Query: 680 gaactgggca 689
||||||||||
Sbjct: 655 gaactgggca 646
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 689
Length of database: 1089
Length adjustment: 10
Effective length of query: 679
Effective length of database: 1079
Effective search space: 732641
Effective search space used: 732641
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no507_k04.g1 MSMg01no507_k04.g1 CHROMAT_FILE:
MSMg01no507_k04.g1 PHD_FILE: MSMg01no507_k04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:36:15 2005
(678 letters)
>mm_chr8_48476624_48477694
Length = 1071
Score = 1067 bits (552), Expect = 0.0
Identities = 645/678 (95%), Gaps = 7/678 (1%)
Strand = Plus / Plus
Query: 1 gtgccctggtttcccagttcttggatgctaaagcacaaggcaggatgagggaaagcaagc 60
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 201 gtgccctggtttcccagttcttggacgctaaagcacaaggcaggatgagggaaagcaagc 260
Query: 61 tgtccccatcctacagtctgccttggatcatccactttcagacagccatggcctgcaggt 120
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 261 tgtccccatcctacagtctgccttggatcatccactttcagacacccatggcctgcaggt 320
Query: 121 gacagtctgtaaaagggcagaccaccatcgatggatctctgtagttaccttttccttcca 180
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 321 gacagtctgtaaaagggcagactgccatcgatggatctctgtagttaccttttccttccg 380
Query: 181 aggggaatacctgacaaaggcttgacctacacatgaaggatgccagggtggagagagtga 240
||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aggggaacacctgacgaaggcttgacctacacatgaaggatgccagggtggagagagtga 440
Query: 241 aagggttatattattgtggttacttattatgcccccacacacaaggagggcaaagctgtg 300
|||||||||| || | ||||||||||||||||||| | || ||||||||||||||||||
Sbjct: 441 aagggttata-taagggggttacttattatgccccc-cccataaggagggcaaagctgtg 498
Query: 301 atccggagagacagaggctgttggagcagggctgtctcggcaggactattctccttagct 360
||| | |||||||| ||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 499 atctgaagagacaggggctgttggagcagggctgtctcggcaggactatt---cttagct 555
Query: 361 caccattgggtaagaaccctgtttgtgtctctgtttcaacttctcagaaaacggggataa 420
||||||||||||| |||||||||||| |||||||||||||||||||||||| ||||||||
Sbjct: 556 caccattgggtaaaaaccctgtttgtctctctgtttcaacttctcagaaaatggggataa 615
Query: 421 ggggaaccccactaaatttcagcaaagattaaatacatcatttacaatcgccagcagcca 480
|| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 ggagaactccactaaatttcagcaaagattaaatacatcatttacaatcgccagcagcca 675
Query: 481 gttctggcattgcgcaaacatcagagtgtacttacattaaccaagatggttgcaggctac 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 gttctggcattgcgcaaacatcagagtgtacttacattaaccaagatggttgcaggctac 735
Query: 541 acagcacacctaggctgtggggaccgtcatcatatgtgcagtctggtgctgactgcctta 600
|||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||
Sbjct: 736 acagcacacctaggctgtggggacggtcatcatatgtacagtctggtgctgactgcctta 795
Query: 601 cacagcacattgctgcacagaaacagactagctcggaatccagcacagcgactatctagt 660
| |||||||| ||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 796 cgcagcacata--tgcacagaaacagactagctcggaatccagcacagcggctatctagt 853
Query: 661 aaatggcggcttttagag 678
||| ||||||||||||||
Sbjct: 854 aaacggcggcttttagag 871
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 678
Length of database: 1071
Length adjustment: 10
Effective length of query: 668
Effective length of database: 1061
Effective search space: 708748
Effective search space used: 708748
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
