BAC Information

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BAC

Clone NameMSMg01-507P02
Chromosome8 (Build37)
Map Location 3,641,433 - 3,642,004
singlet/doubletsinglet
Overlap geneStxbp2
Upstream geneEG664801, EG209786, D630014A15Rik, Insr, A430078G23Rik, Arhgef18, Pex11c, 1700019B03Rik, Zfp358, Mcoln1, Pnpla6, C330021F23Rik, 2310057J16Rik, Xab2, Pcp2
Downstream geneRetn, 1810033B17Rik, LOC664858, Trappc5, Fcer2a, Clec4g, Cd209a, LOC664870, Cd209e, Cd209d, Cd209b, Cd209c, LOC664888, EG384770, EG664905, LOC664915, LOC664922, LOC631071, Cd209f, Cd209g, B130050I23Rik, BC068157, Lrrc8e, Map2k7, LOC100039590, Snapc2, Ctxn1, Timm44, Elavl1, Ccl25, LOC664977, Ppia-ps8_36.1, Lass4, Vmn2r-ps89, EG633533, BC003267, LOC665021
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-507P02.T7 (MSMg01no507_p02.b1)MSMg01-507P02.TJ (MSMg01no507_p02.g1)
ACCAG581971AG581972
length763788
length of high quality
(start - end)
576 (73 - 648)243 (74 - 316)
definitionCHROMAT_FILE: MSMg01no507_p02.b1 PHD_FILE: MSMg01no507_p02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:36:40 2005CHROMAT_FILE: MSMg01no507_p02.g1 PHD_FILE: MSMg01no507_p02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:36:40 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCGAACACCGCGGAANNC
CTTGCTTGTTACCCTAACTTTCTCTATCCCCTGTGTTCCCCTGTAAGCTC
TCTCCTCTCCTCCAGAAGCCTCTCATGCTGGCCCCTGGCCACCCCCCACA
CTCCAAAGCCTCATAACCAAAAAATAATCTATCAGAGGCTCTGTCTTTAT
CAGTTTGTGGGAATGTCCTGGTACCTCCTGCTTGGGGACCCAACAACCTT
GCACCTTAGCTTCCTGGATTCCTGGGTCCCCAAGAGACAAGGAAGCATAG
ACAGTGGTACCATGGTCATTTTATGTTGCTGAGCTCCACTGGCTGGGGTT
CTTTAACTCTTCCTGTCTGGCTCCCCAGGATGTGGTGGAGGACCGGCTAG
ACCGAAAGCTGTGGCCCTTTGTGTCTGACCCTGCCCCTGTGCCTAGCTCC
CAGGCAGCTGTCAGGTGAGGGCCCTGGAGAGGCCTGGGTTGGGGGTTGGG
AGCTGCCAGCCTGGACTGACCTCTACCCATCACCCCAGCAGCGCTCGCTT
TGGCCACTGGCACAAAAACAAAGCTGGAGTAGAGGCCCGGGCTGGGCCTA
GGCTCATCGTGTACATTGTGGGTGGTGTCGCCATGTCCGAAATGAGGGCT
GCCTATGATGTGACCAGTGCCACTGAGGGCAAGTGGGAGGTGCTCATAGG
TAAGTAGCCAGAACTGGGGTTCTTGGGAGTATGACTGTGGGGATTCCTGG
GGAACAGAGCTGG
ATGCTGTGNGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXGATTGCGGAAAAATTCTTTATGTCCTCTACCATCATCATGAGA
TATGCTTTTAAATCCTGGTCTACCTTTTCAGGTGTGTTAGGGTGTCCTGG
ATTGGGCGAAGCGGGCGTTCTGGGTTCTGATGATGGTGAGTGGTCCTGGC
TTCTGTTAGTAGGATTCTTACGTTTACCTTTCGCCATCTGGCAATCTCTG
GAGTTAGTTGGAGGAGCTAGAAAAAGTATCCAAGGAGCTAAAGAGATCTG
CAACCCTGTAGGTGTATTACTTTTTGAACTAACCAGTACCCCGGAGCTCT
TGACTCTAGCTGCATATGCATCAAAAGATGGCCTAGTCGGCCATCACTGG
AAAGAGAGGCCCATCGCACACGCAAACTTTATATGCCCCAGTACAGGGGA
ACGCCAGGGCCATAAAAGGGGAGTGGGTGGGTAGTGGGAGAGGTTCTCTT
CTTTTCTCTTCTTTTTCTCTTTTTTCTTTCTCTTTTTTCTTTCTTTTGTT
CTTTTTTTCTTCTTCCTCTTTTTTGTCTTTTTTTTTTTTTCTTTTTTTTT
CTCCTTTTTTTTTTTTTTCCTTTATTCTTTTTCTTCTCCCCCTGTTTTCG
ATGTTCTTTTTTTTATTTTTTTTTTTTATTCTTTTTTCCTCTCTTTTTAT
TTATCTTATTTTTCACCACTTCCATTTATACTCTTTCTTTTTCTTTTTTT
TTCCCTTCTCTTTCATTTTTTTTTTATTTTTTCTTCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no507_p02.b1 MSMg01no507_p02.b1 CHROMAT_FILE:
MSMg01no507_p02.b1 PHD_FILE: MSMg01no507_p02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:36:40 2005
         (576 letters)



>mm_chr8_3641233_3642204
          Length = 972

 Score = 1036 bits (536), Expect = 0.0
 Identities = 565/576 (98%), Gaps = 4/576 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctatcccctgtgttcccctgtaagctctctcctctcctccagaagcctctcatgctggc 60
           |||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 201 tctaccccctgtgttcccctgtaagctctctcctgtcctccagaagcctctcatgctggc 260

                                                                       
Query: 61  ccctggccaccccccacactccaaagcctcataaccaaaaaataatctatcagaggctct 120
           ||||||   |||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 261 ccctgg---ccccccacactccaaagcctcataaccaaataataatctatcagaggctct 317

                                                                       
Query: 121 gtctttatcagtttgtgggaatgtcctggtacctcctgcttggggacccaacaaccttgc 180
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 gtctttatcagtttgtggaaatgtcctggtacctcctgcttggggacccaacaaccttgc 377

                                                                       
Query: 181 accttagcttcctggattcctgggtccccaagagacaaggaagcatagacagtggtacca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 accttagcttcctggattcctgggtccccaagagacaaggaagcatagacagtggtacca 437

                                                                       
Query: 241 tggtcattttatgttgctgagctccactggctggggttctttaactcttcctgtctggct 300
           ||||||||| | ||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 438 tggtcatttca-gttgctgagctccactggctggggttctttaacccttcctgtctggct 496

                                                                       
Query: 301 ccccaggatgtggtggaggaccggctagaccgaaagctgtggccctttgtgtctgaccct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 ccccaggatgtggtggaggaccggctagaccgaaagctgtggccctttgtgtctgaccct 556

                                                                       
Query: 361 gcccctgtgcctagctcccaggcagctgtcaggtgagggccctggagaggcctgggttgg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 gcccctgtgcctagctcccaggcagctgtcaggtgagggccctggagaggcctgggttgg 616

                                                                       
Query: 421 gggttgggagctgccagcctggactgacctctacccatcaccccagcagcgctcgctttg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 gggttgggagctgccagcctggactgacctctacccatcaccccagcagcgctcgctttg 676

                                                                       
Query: 481 gccactggcacaaaaacaaagctggagtagaggcccgggctgggcctaggctcatcgtgt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 gccactggcacaaaaacaaagctggagtagaggcccgggctgggcctaggctcatcgtgt 736

                                               
Query: 541 acattgtgggtggtgtcgccatgtccgaaatgaggg 576
           ||||||||||||||||||||||||| ||||||||||
Sbjct: 737 acattgtgggtggtgtcgccatgtcggaaatgaggg 772


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 576
Length of database: 972
Length adjustment: 10
Effective length of query: 566
Effective length of database: 962
Effective search space:   544492
Effective search space used:   544492
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)