Query= MSMg01no508_h04.b1 MSMg01no508_h04.b1 CHROMAT_FILE:
MSMg01no508_h04.b1 PHD_FILE: MSMg01no508_h04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:37:21 2005
(699 letters)
>mm_chr8_119297298_119298398
Length = 1101
Score = 1174 bits (607), Expect = 0.0
Identities = 674/699 (96%), Gaps = 10/699 (1%)
Strand = Plus / Plus
Query: 5 gaattccaggactttctaggctgttgataccgagaaaccctgtctcgggg--agaaaaaa 62
|||||||||||| ||||||||||||||||||||||||||||||||||| | ||||||
Sbjct: 205 gaattccaggacaccctaggctgttgataccgagaaaccctgtctcgggggaaaaaaaaa 264
Query: 63 aaagcaacccatgaattaagcaagaagttcaatataaagatagaaattattgccaggcag 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aaagcaacccatgaattaagcaagaagttcaatataaagatagaaattattgccaggcag 324
Query: 123 tggtggtgcatgcctttaatcccagcacttgggaggcagaggcaggtggattcctgagtt 182
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tggtggtgcacgcctttaatcccagcacttgggaggcagaggcaggtggattcctgagtt 384
Query: 183 cgaggccagcttggtctacagagtgagttccaggacagccagggctatacagagaaaccc 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 cgaggccagcttggtctacagagtgagttccaggacagccagggctatacagagaaaccc 444
Query: 243 tgtctcaaaaaaaaaacaaaaaaaggg-aaaaaaagaaaaaagaaattattgaaaaggaa 301
|||||| |||||||||||||| ||| ||||||||||||| |||||||||||||||||
Sbjct: 445 tgtctc---aaaaaaacaaaaaaggggaaaaaaaagaaaaa--aaattattgaaaaggaa 499
Query: 302 acatgtatttggggcctgaagaatgcaatatgtagaataaatgctatagagggtgtcagc 361
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 500 acatgtatttggggcctgaagaatacaatatgtagaataaatgctatagagggtgtcagt 559
Query: 362 gggccttacctatgcagaaaaatttgaagacatgtcacgggaaggcaggtggtcagaaaa 421
||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 gggccttgcctatgcagaagaatttgaagacatgtcacgggaaggcaggtggtcagaaaa 619
Query: 422 gacaagacaaggaaagggggtgagaaagaattccgtaaccctaggacaccaattaaagag 481
||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct: 620 gacaagacaaggaaagggggtgagaaagaatgccataaccctaggacaccaattaaagag 679
Query: 482 tgaacattctcaacctatgcatctcactttaaaaaaaaaaaatcacagctgaaactttcc 541
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 taaacattctcaacctatgcatctcactttaaaaaaaaaaaatcacagctgaaactttcc 739
Query: 542 agaatctaatgaaaaacatggacgtccagattctcatagctcaaacgtctccaaccaggt 601
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 agaatctaatgaaaaacatggacgtccagattctcatagctcaaacgtctccaaccaggt 799
Query: 602 cgacccaaaggaaccttcatgaagatttagcatactactgctcatcaatttatattagaa 661
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 800 tgacccaaaggaaccttcatgaagatttagcatactactgctcatcaatttatattaga- 858
Query: 662 gt-ctatcccaatggacatcttctaagttgaaaatgtaa 699
|| |||||||||||||||||| |||||||||||||||||
Sbjct: 859 gttctatcccaatggacatctcctaagttgaaaatgtaa 897
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 699
Length of database: 1101
Length adjustment: 10
Effective length of query: 689
Effective length of database: 1091
Effective search space: 751699
Effective search space used: 751699
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no508_h04.g1 MSMg01no508_h04.g1 CHROMAT_FILE:
MSMg01no508_h04.g1 PHD_FILE: MSMg01no508_h04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:37:21 2005
(585 letters)
>mm_chr8_119455476_119456459
Length = 984
Score = 1077 bits (557), Expect = 0.0
Identities = 578/585 (98%), Gaps = 1/585 (0%)
Strand = Plus / Minus
Query: 1 cggccactgctaggttgtcagctctgggattcaatggccactgctaggttgtcagctagc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 784 cggccactgctaggttgtcagctctgggattcaatggccactgctaggttgtcagctagc 725
Query: 61 tccagtccacctcagaattctgacccaggaaaggagaacctgaagagcagccagccagct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 724 tccagtccacctcagaattctgacccaggaaaggagaacctgaagagcagccagccagct 665
Query: 121 cgctcctccttccctctgggatcttactgcaggaagagcaggtggctatgctgcctgcta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 664 cgctcctccttccctctgggatcttactgcaggaagagcaggtggctatgctgcctgcta 605
Query: 181 ggctgcctttcctgatcctctggtgcaatggtgaggaactctccctgtctgggctgcggg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 604 ggctgcctttcctgatcctctggtgcaatggtgaggaactctccctgtctgggctgcggg 545
Query: 241 tttttattgatcatgtgttgtcccttggtgagcagcaagagtgtgctcctctttggagct 300
|| | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 544 ttcgca-ggatcatgtgttgtcccttggtgagcagcaagagtgtgctcctctttggagct 486
Query: 301 ctgtggcccctactggttggaacagcaaagcgtctcactccacgcaagagtgaccaatag 360
|||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||
Sbjct: 485 ctgtggcccctactggttggaacagcaaagcgtctcactctaggcaagagtgaccaatag 426
Query: 361 aagagccatcagctgcatgtggaccatctaatgggaattcattaagtaagcttaaagatt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 aagagccatcagctgcatgtggaccatctaatgggaattcattaagtaagcttaaagatt 366
Query: 421 caattgcttggtcatttcagcgacctatcaagtcctcacgtggcaggcagctatgaactg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 caattgcttggtcatttcagcgacctatcaagtcctcacgtggcaggcagctatgaactg 306
Query: 481 gacattgttaactgagggtgctgctgccacagcagagttccactaagtgttgctcctgag 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 gacattgttaactgagggtgctgctgccacagcagagttccactaagtgttgctcctgag 246
Query: 541 atgtactgggtgggatgggcaggcgagagatggaagtaatacttc 585
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 atgtactgggtgggatgggcaggcgagagatggaagtaatacttc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 585
Length of database: 984
Length adjustment: 10
Effective length of query: 575
Effective length of database: 974
Effective search space: 560050
Effective search space used: 560050
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
