NNAACTCATXXXXXXXXXXXXXXXXXXXXXXXXXATCGAAAATAGGATCC
GCGGAATTCTTTTTTCAGCTCTGTACCCCATTTTTAATGGGGTTATTTGA
ATTTCTGGAGTTCAGCTTCTTAAGCTCTTTGTATATATTGGATATTAGTC
CCCTATCAGATTTAGGATAGTAAAGATCCTTTCCAATCTGTTGGTGGCCT
TTTTGTCCTATTGACAGTATCTTTTGCCCTACAGAAGTTTTAGAATTTTA
TGAGGTCCCATTTGTCGATTCTTGATCTTACAGCATAGGCCATTGCTGTT
CTGTTTAGGAATTTTTTTTTTGTGCCCATATCTTCGAGGGTTTCCCCCCC
CCACTTTCTCCTCTATAAGTTTCAGTGTGTTAGCTAAAATCTTATCTGAT
AACTATGTTCTATGAATGTCTCTTTGGTGAGCAGGATGAGAAGAGAAGAT
TCATTTATCACAGCATCTCTTGATGTTGCAAATACCCTGGCACTAACCAC
TTAGAGCACTGTGTGCCCAGTAGAGCTGCGGTTCTCAACGTTTGGGTTGT
GACTCCTTAAGGGGTTAAATTATCCTTTCACAGGGATCTCATATAGGATA
TTGTATATCATACATTACAATTCACAACAGTAGCAAAATTACAGTTATGA
AGTAGCAAGGAAAATGATTTTATGGTTGGGCGTCACCACCACATGCGGAA
CTATATTAAAGAGTCGCAGAAGTAGGATGGTTGTGAACCATTGTGCTG

TCTTTTTCTTCTTTTGCGGAGTTAAAATTTCTATGAXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXTCCCTAGNCTGGNGTCCCTCATCTCCCCCCATACAATGTCTCTAA
GATGTTATGACCATCAAGAGGATAATGCTCATATCCCTCTGTACATGGAC
AAAGAAACATAAAGCTTCATCATTGAGTGTATTCGCCCTGTTTCAAGTGA
AAGAAAAAATTTGCCATTTTGTTCCTACCATCTTAAAGGNGGTTTGGGGT
GTGTTTTTTGNGTTTTTTGGTTTTTTTTTCTTAAAAAAAAAAAAAAAAAA
ANANTTTTTTTTTTTTTTTGAAAAAAGGGAGGAGACCAACCCGGCCACAC
AGACAAAAACGCTCTCCCCACCCACACAACGGAGAGCCCCAGCAAAAAAG
ACAAACACGCACCCAACGAAACGCGCGAGCAGACACGCCCCCCCCCCCCC
CAAAAACAAGACAGGCCCCCGACCCACCAAATAATTTTACCTCTCTTTTT
ACCCTAGTCTTTTTTTTTCCCTACCTACCCCCTTATTTTTTTTTTCCTTT
TTTCTCTTTCATTTACTTCTTTTCCCCTTTCTTTTCCTCCTTTTCCGTTT
CCCCCGTTTTTTTCCTACCTTCCTTTTCTCTTTTTTTTTTTTTTTG

Query= MSMg01no509_a16.b1 MSMg01no509_a16.b1 CHROMAT_FILE:
MSMg01no509_a16.b1 PHD_FILE: MSMg01no509_a16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:38:09 2005
         (701 letters)



>mm_chr8_33279897_33280997
          Length = 1101

 Score = 1294 bits (669), Expect = 0.0
 Identities = 690/701 (98%), Gaps = 11/701 (1%)
 Strand = Plus / Plus

                                                                       
Query: 7   gaattcttt-tttcagctctgtaccccatttttaatggggttatttgaatttctggagtt 65
           ||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 gaattctttgttt-agctctgtaccccatttttaatggggttatttgaatttctggagtt 264

                                                                       
Query: 66  cagcttcttaagctctttgtatatattggatattagtcccctatcagatttaggatagta 125
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 cagcttcttaagctctttgtatatattggatattagtcccctatcagatttaggatagta 324

                                                                       
Query: 126 aagatcctttccaatctgttggtggcctttttgtcctattgacagtatcttttgccctac 185
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aagatcctttccaatctgttggtggcctttttgtcctattgacagtatcttttgccctac 384

                                                                       
Query: 186 agaagttttagaattttatgaggtcccatttgtcgattcttgatcttacagcataggcca 245
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 agaagttttagaattttatgaggtcccatttgtcgattcttgatcttacagcataggcca 444

                                                                       
Query: 246 ttgctgttctgtttaggaattttttttt----tgtgcccatatcttcgagggttt-cccc 300
           |||||||||||||||||||    |||||    ||||||||||||||||||||||| ||||
Sbjct: 445 ttgctgttctgtttaggaa----tttttcccctgtgcccatatcttcgagggtttccccc 500

                                                                       
Query: 301 cccccactttctcctctataagtttcagtgtgttagctaaaatcttatctgataactatg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cccccactttctcctctataagtttcagtgtgttagctaaaatcttatctgataactatg 560

                                                                       
Query: 361 ttctatgaatgtctctttggtgagcaggatgagaagagaagattcatttatcacagcatc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttctatgaatgtctctttggtgagcaggatgagaagagaagattcatttatcacagcatc 620

                                                                       
Query: 421 tcttgatgttgcaaataccctggcactaaccacttagagcactgtgtgcccagtagagct 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tcttgatgttgcaaataccctggcactaaccacttagagcactgtgtgcccagtagagct 680

                                                                       
Query: 481 gcggttctcaacgtttgggttgtgactccttaaggggttaaattatcctttcacagggat 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gcggttctcaacgtttgggttgtgactccttaaggggttaaattatcctttcacagggat 740

                                                                       
Query: 541 ctcatataggatattgtatatcatacattacaattcacaacagtagcaaaattacagtta 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ctcatataggatattgtatatcatacattacaattcacaacagtagcaaaattacagtta 800

                                                                       
Query: 601 tgaagtagcaaggaaaatgattttatggttgggcgtcaccaccacatgcggaactatatt 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 tgaagtagcaaggaaaatgattttatggttgggcgtcaccaccacatgcggaactatatt 860

                                                    
Query: 661 aaagagtcgcagaagtaggatggttgtgaaccattgtgctg 701
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 861 aaagagtcgcagaagtaggatggttgtgaaccattgtgctg 901


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 701
Length of database: 1101
Length adjustment: 10
Effective length of query: 691
Effective length of database: 1091
Effective search space:   753881
Effective search space used:   753881
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)