BAC Information

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BAC

Clone NameMSMg01-509P06
Chromosome8 (Build37)
Map Location 113,339,836 - 113,466,705
singlet/doubletdoublet
Overlap geneSf3b3, Cog4, Fuk, St3gal2
Upstream geneAp1g1, Phlppl, Marveld3, LOC100041884, Tat, Chst4, Zfp612, Gm1467, Calb2, BC025546, Hydin, LOC672398, Vac14, BC060632, 2010004A03Rik
Downstream geneDdx19a, Ddx19b, Aars, Exosc6, Mrcl, 4930402E16Rik, 9430091E24Rik, Glg1, Rfwd3, LOC547023, Mlkl, Fa2h, Wdr59, Znrf1, Ldhd, Zfp1, Ctrb1, Bcar1, Cfdp1, Tmem170, Chst5, 4932417I16Rik, Gabarapl2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-509P06.T7 (MSMg01no509_p06.b1)MSMg01-509P06.TJ (MSMg01no509_p06.g1)
ACCAG583506AG583507
length736749
length of high quality
(start - end)
120 (127 - 246)347 (327 - 673)
definitionCHROMAT_FILE: MSMg01no509_p06.b1 PHD_FILE: MSMg01no509_p06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:39:23 2005CHROMAT_FILE: MSMg01no509_p06.g1 PHD_FILE: MSMg01no509_p06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:39:23 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(113,339,836 - 113,339,955)(113,466,359 - 113,466,705)
sequence
AACCATAATTTGCGGTTGCAAACGAATCCCATTGGTCATTGTCCGNGGAA
NNAGNAAGTATCTCTTTCGGGAGAANNGAAGGNNNGNTCTCACCTTGTGC
AGAAACTCCAACTTCTCCCCGTTGATCACAAGCTTGTACGTATACACAAA
GCCCCCTGCCACAGATCGAGGGCTCAGTATCAAGTCCTTGGCAACACCCA
CCAGCACATACCAATCTTCACCAGTGTTGGAGAACCTACACACTGCCTTT
TTTAAAATAGACCAAGAAGGCAAAGTCAGGCATTAGTTAAAACCCCAAGA
ACCCCGCTCACATTTTTTTTTTTTCGACNGCCCNCAGGNCCCAACCNAAA
GGCNGCCTCTCNNCGCCCCAACNGGACAAGGNCCAGCGGCAACCCCGGGA
AAGGGNNCACCACCCGAANCACAGAGGCCCACCGCCCANGGCCAGCCNNG
GGAGCCCCAAAAAGGGAACCCGGGAGGCNCNCCACGAGGAAGGCCGCCGC
CANNACAGCAGCCAACACCCGCGCANCCNCCCCAGCNGCANCNACCAAAN
CCGAAACCCAAAAAGCAAGAACAGACGAGACGAGACGCGAAGGAGCAAAG
AAGACGGNNNGCCAGCACCACGGCNCCCNCAAACAGAGAAACGAAAGGAA
GGGCCTTCTACAGCCCCACCGGAAGAGGCACCCGNGACCCGACAGGCAAN
CAGCCCCAACAAAGGGAGCAGCACGGCCGCACCCAA
NAACGATGCTGTGGTAGGCCGGGNGGNCGCCTGGTCAATACATGGGGGNG
AACTATAGAAGTACAAAAAAAAGGCCTAGCCGGNATCCCCACAACTCTGG
AGAGCATCCTGAGGCATAAGCCCTGCACATAACCCACTAGTTGACCCCAC
GCCAGGTCAATCAGCTCTCCAAACCTGAGAACAATCTCCCCAGGGGGAAG
CAGTCTTGCTTCCCAGCCCCCAGCTCTGACCAATCACAGGCACTTTTACC
CCTTGGTGATAGGTACGGGCTTCCAGGAACACAGAGATCTCAGAGGCAGA
TATGCCTTGGTGGACCTTTATCCTACATAGAACAGAAGCCATATGCTCAC
TGTAGGGCAGATTGTCAGCTCTTAGCCCAGCTGCCACAGAGATTCTACAT
AGTTCCCCCGAGACCCACCTCACGCCTGTAGCTCTCTAGTCATTAAGTCA
ACAGTAGGATTCTAGGAAAGCCAGGAGGGTTTCCCGTGAGGTCATGAGGA
GACATGAGGAGAACCAGAGGATGCATAGAAACTTTAAAGGGAGGAGAGAG
GGAGAAATCACATAAGACAGGACACAATCAGAGTATGGCTGTAGATTGAA
GGAGAGAAATCCAAGGCTCTCGGGAGGGTTTTTAGAAGAAGTAGAAATTA
AGCTGAATAAATGCTAGCGGAAGACAAGCCAGACAAGCTTGCGTGGCCCA
GACTTGAGGTTTTCATCTGCCACCTGAGCTTTCTCTTCATTTCTTTTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no509_p06.b1 MSMg01no509_p06.b1 CHROMAT_FILE:
MSMg01no509_p06.b1 PHD_FILE: MSMg01no509_p06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:39:23 2005
         (120 letters)



>mm_chr8_113339636_113340155
          Length = 520

 Score =  232 bits (120), Expect = 5e-66
 Identities = 120/120 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   cacaagcttgtacgtatacacaaagccccctgccacagatcgagggctcagtatcaagtc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cacaagcttgtacgtatacacaaagccccctgccacagatcgagggctcagtatcaagtc 260

                                                                       
Query: 61  cttggcaacacccaccagcacataccaatcttcaccagtgttggagaacctacacactgc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cttggcaacacccaccagcacataccaatcttcaccagtgttggagaacctacacactgc 320


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 120
Length of database: 520
Length adjustment: 8
Effective length of query: 112
Effective length of database: 512
Effective search space:    57344
Effective search space used:    57344
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no509_p06.g1 MSMg01no509_p06.g1 CHROMAT_FILE:
MSMg01no509_p06.g1 PHD_FILE: MSMg01no509_p06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:39:23 2005
         (347 letters)



>mm_chr8_113466159_113466905
          Length = 747

 Score =  617 bits (319), Expect = 0.0
 Identities = 340/347 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   atagaacagaagccatatgctcactgtagggcagattgtcagctcttagcccagctgcca 60
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 547 atagaacagaagccatatgctcactgtggggcagattgtcagctcttagcccagctgcca 488

                                                                       
Query: 61  cagagattctacatagttcccccgagacccacctcacgcctgtagctctctagtcattaa 120
           ||||||| |||||||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 487 cagagatcctacatagctcccccgagacccatctcacgcctgtagctctctagtcattaa 428

                                                                       
Query: 121 gtcaacagtaggattctaggaaagccaggagggtttcccgtgaggtcatgaggagacatg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 gtcaacagtaggattctaggaaagccaggagggtttcccgtgaggtcatgaggagacatg 368

                                                                       
Query: 181 aggagaaccagaggatgcatagaaactttaaagggaggagagagggagaaatcacataag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 aggagaaccagaggatgcatagaaactttaaagggaggagagagggagaaatcacataag 308

                                                                       
Query: 241 acaggacacaatcagagtatggctgtagattgaaggagagaaatccaaggctctcgggag 300
           ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct: 307 acaggacacaatcagagtatggcggtagactgaaggagagaaatccaaggctctcgggag 248

                                                          
Query: 301 ggtttttagaagaagtagaaattaagctgaataaatgctagcggaag 347
           ||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 247 ggtttttagaagaagtagaaattaagctgaagaaatgctagcggaag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 347
Length of database: 747
Length adjustment: 9
Effective length of query: 338
Effective length of database: 738
Effective search space:   249444
Effective search space used:   249444
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)