BAC Information

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BAC

Clone NameMSMg01-510A15
Chromosome8 (Build37)
Map Location 53,724,929 - 53,725,121
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC623872, LOC100040220, LOC623935, 1190028D05Rik
Downstream geneLOC676688, Aga, Neil3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-510A15.T7 (MSMg01no510_a15.b1)MSMg01-510A15.TJ (MSMg01no510_a15.g1)
ACCAG583569AG583570
length729722
length of high quality
(start - end)
402 (328 - 729)194 (124 - 317)
definitionCHROMAT_FILE: MSMg01no510_a15.b1 PHD_FILE: MSMg01no510_a15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:39:30 2005CHROMAT_FILE: MSMg01no510_a15.g1 PHD_FILE: MSMg01no510_a15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:39:31 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NGGACCTATAAXXXXXXXXXXXXXXXXXXXXXXXXAATGCGAGAAATGCG
CGGAATTCATTCTTTTTACTAGATAAGGAGTACTCCATTGTGTAAATGTA
CCACATTTTTTGTACCATTCCTCTGTTGAGGGACATCTGGGTTCTTTCCA
GCTTCTGGCTATTATAAATAAGGCTGCTATGAACATAGTGGAGCATGTGT
CCTTCTTACCTGTTGGGACATTTTCTGTATATATGCCCAGGAGAGGTATT
GCTGGATCCTCCGGTAGTACTATGTCCAATTTTCTGAGGAACCGCCAGAC
TGATTTCCAGAGTGGTTGTACATGCTTGCAATCCCACCAACAATGGAGGA
GTGTTCCTCTTTCTCCACATCCTCGCCAGCATCTGCTGTCACCTGAATTT
TTGATCTTAGCCATTCTGACTGGTGTGAGATGGAATCTCAGGGTTGTTTT
GATTTGCATTTCTCTGATGATTAAGGATGTTGAACATTTTTTCAGGTGTT
TCTCAGCCTTTCGGTATTCCTCGGGTGAGAATTCTTTGTTCAGCTCTGAG
CCCCATCTTTTAAGGGGGTTATTTGATTTTCTGGAGTCCACCCTTTTGAG
TTCTTTATATATATATATATTGGATATTAGTCCCCTATCTGATTTAAGAT
AGGTAAAGATCCTTTCCCAATCTGTTGGTGGCCTTTTTGTCTTATTGACA
GTGTCTTTTGCCTTGCAGAAGCTTTGCAG
NCCGCGATGCTGTGGGTGGCCTGGCGGCCGCCTGGTTTCAAATCGAGGNG
ACCNANAGAAGGTTACAAAAAAGTCGGTCNAACTCCCTAGAAATGTATCT
TCAATTTTCACATGGGTCATTTCTTTTTTCAGCTAACGTTTTGATTGAAT
GGCGTGTCATTGTCTACTAATTCTTCCCTGATGCAATTATGAACCTTTTT
ACTTTGGGTTCTAGAGCGTCCATTAATTTCATGTAAACCAAAAGCTTAAT
TTCCTGATATACAGTGACTATTTCCAAATCTGTTATTTTGAATATTTCCT
TTATGATTTTCTTCTATTTGTTTTCTTTTCCNGAAATATCCAAATTAGTA
AAATTTATTATCTCTTAAACTATTATTAATCAGAATTTCTGCCTTAGATG
AAGTTCAGAAAGACTCCCCACCTTCTCATGGCCTTGGTTAGAATTCTGAG
ATCTCCTCAAATCTCTATATCTAACCACCATGCAAGTGATAATTAAAATG
TAATATTCCTATAACAACTATAATTTACATGTTTGCTTCTTTTTTTCATA
TTTTTCAATATGTAGCCATTTGTTTCAAATAAGTGTGGTCTTCAGGATAT
GGCTTTGATCAACTCAAAATTGATTTTCCTTCGTGCTAAAAAGCAACCTA
CTTGTGTTCCTGATATTGCCAATGCAAACTAGCCATGTTACTAATCAAAC
ATACAAGTTAAATTTCTTCCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no510_a15.g1 MSMg01no510_a15.g1 CHROMAT_FILE:
MSMg01no510_a15.g1 PHD_FILE: MSMg01no510_a15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:39:31 2005
         (194 letters)



>mm_chr8_53724729_53725322
          Length = 594

 Score =  358 bits (185), Expect = e-103
 Identities = 191/193 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttttttcagctaacgttttgattgaatggcgtgtcattgtctactaattcttccctgatg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 ttttttcagctaacgttttgattgaatggcgtgtcattgtctactaattcttccctgatg 334

                                                                       
Query: 61  caattatgaacctttttactttgggttctagagcgtccattaatttcatgtaaaccaaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 caattatgaacctttttactttgggttctagagcgtccattaatttcatgtaaaccaaaa 274

                                                                       
Query: 121 gcttaatttcctgatatacagtgactatttccaaatctgttattttgaatatttccttta 180
           |||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 gcttaatcacctgatatacagtgactatttccaaatctgttattttgaatatttccttta 214

                        
Query: 181 tgattttcttcta 193
           |||||||||||||
Sbjct: 213 tgattttcttcta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 194
Length of database: 594
Length adjustment: 8
Effective length of query: 186
Effective length of database: 586
Effective search space:   108996
Effective search space used:   108996
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)