BAC Information

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BAC

Clone NameMSMg01-511C06
Chromosome8 (Build37)
Map Location 119,468,384 - 119,643,172
singlet/doubletdoublet
Overlap geneBC060631, 1700030J22Rik, Gcsh, Pkd1l2, Bcmo1
Upstream geneLOC384868, LOC668233, Dynlrb2, Cdyl2, LOC100043053, 2310061C15Rik, 2610510J17Rik
Downstream geneGan, 4933407C03Rik, Plcg2, 4632417N05Rik, Hsd17b2, Mphosph6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-511C06.T7 (MSMg01no511_c06.b1)MSMg01-511C06.TJ (MSMg01no511_c06.g1)
ACCAG584408AG584409
length716734
length of high quality
(start - end)
405 (37 - 441)339 (74 - 412)
definitionCHROMAT_FILE: MSMg01no511_c06.b1 PHD_FILE: MSMg01no511_c06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:40:55 2005CHROMAT_FILE: MSMg01no511_c06.g1 PHD_FILE: MSMg01no511_c06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:40:55 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(119,642,779 - 119,643,172)(119,468,384 - 119,468,722)
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGGATCCGCGGAA
TTCCTGTCCCTCTGCACTCACAGATACACCTTTAGTCACCAATCCAGGGT
TCCAGCCTTGCTCTGTGGCCTGGGACACATTCCTTTACCTCTTTGACTCT
CGTTTTGTTGTTGCTGTGTTTTGTTTTTTTCAACTATAAAAGGAGCCTCC
CAACTTTCCCCAGAAGTTGTTGCAGTCATGACGTGATGTAAAATATACAA
AGACAAAAGGTACAGCAAAGTCCCTGGCATGCAGGGCTCCTTCAGTAAAT
GGGAGCCGCCACGTCTTAAATGAGTTCAATTTGGTTTCATTTAAATTAAT
TATATCATGAAGTCAGTGAGTTCTGGAGCCAGAAGCTTCCTCTTGCTCAG
AGTCCATGACAGCAGCATCCTGACTGAGGAGGACTCTTGGCCCCATTGAT
TGTACACAATGCTAAGAACAATTTCTCAACAGCATAGATATCATGGAAGC
TGGTCGTGCCGGATTCTTCCCTTGGACCATTATCTGAATATTTTAAATGA
CAGCATATATCTATGGAGGCTTATATACGCATTTGGTATACTATGTTGAA
TGCGAGAGAGTATGCTTTCCCTTGTTTATGTGACAAACCGATGGGTATTC
CACTTATTGATACACTCTTCTGACCTCGATAATCCACAATAGTCAAGTTT
GCGTGCTGCACAGCTC
TTGATGTGGAGTGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXACCGTGGGCATCCCCCACCCCCACCCC
TGAGAACTCCCCAACTGTAACTTTTAGGTTTTACTCTGTAGTAAGGCCAA
TAAGTGTAGTAAGGCCAACAAAAGGCAACAGTGATGTCAGGGAAAGGTCA
GTCAGGAAATGTCAGCAGGGGCAAGCTGAGGAAGTTCTGTGTAAAGGTTT
GAGCCTCGTTCCAGAACACAACTCACTACAGGCTCCAACCTGAAGCTTCC
TCTTTCATCCTAAATGTTAAATTCTCTCTTTCTCTCACCATGATTTAGGG
GGGTGGAGAGTGAGTGTGCCTGTAATAATTCCATGGCCTAATCCCTCAGC
TCCTTACAACTTGCATTCTACAACGGTCTCCAGCCTTCAGTGTTGTCCCC
CTTGTTGATAGGATAGTTTATGTCCTTGTATAGTTCAAACTATCCTCAAA
CTCATTATGTTTCTGAGGATAATCTTGAACTCTTGATCCTCCTGCCCTAC
ATGCTCCCGAAGTCTCCTAAATGTTGATGTTGTCGGCTTGCATCATTATG
CCCATTTTTATTCAGCGTTTGCTTACTTTCCCTGTTTTTCTTTTGCTGTT
CTCTTCTGGGTTTCATCTTCAGCTCATGTCCCGTTTGATTTCCGACATCA
CACACATTCTGTTGCCCTTGACCTTGTTTTCTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no511_c06.b1 MSMg01no511_c06.b1 CHROMAT_FILE:
MSMg01no511_c06.b1 PHD_FILE: MSMg01no511_c06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:40:55 2005
         (405 letters)



>mm_chr8_119642568_119643372
          Length = 805

 Score =  708 bits (366), Expect = 0.0
 Identities = 387/394 (98%)
 Strand = Plus / Minus

                                                                       
Query: 12  gaattcctgtccctctgcactcacagatacacctttagtcaccaatccagggttccagcc 71
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 gaattcctgtccctctgcactcacagatacacctttagtcaccaatccagggttccagcc 546

                                                                       
Query: 72  ttgctctgtggcctgggacacattcctttacctctttgactctcgttttgttgttgctgt 131
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 545 ttgctctgtggcctgggacacattcctttacctctttgactctcgttttgttgttgttgt 486

                                                                       
Query: 132 gttttgtttttttcaactataaaaggagcctcccaactttccccagaagttgttgcagtc 191
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 gttttgtttttttcaactataaaaggagcctcccaactttccccagaagttgttgcagtc 426

                                                                       
Query: 192 atgacgtgatgtaaaatatacaaagacaaaaggtacagcaaagtccctggcatgcagggc 251
           |||||||||||||||||| |||||||||||||| ||||||||| |||||||| |||||||
Sbjct: 425 atgacgtgatgtaaaataaacaaagacaaaaggcacagcaaagcccctggcaggcagggc 366

                                                                       
Query: 252 tccttcagtaaatgggagccgccacgtcttaaatgagttcaatttggtttcatttaaatt 311
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 365 tccttcagtaaatgggagccgccacgtcttaaatgagttcaatttggttccatttaaatt 306

                                                                       
Query: 312 aattatatcatgaagtcagtgagttctggagccagaagcttcctcttgctcagagtccat 371
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 305 aattatatcatgaagtcagtgagttctggagccagaagcttcctcttgctcagagcccat 246

                                             
Query: 372 gacagcagcatcctgactgaggaggactcttggc 405
           ||||||||||||||||||||||||||||||||||
Sbjct: 245 gacagcagcatcctgactgaggaggactcttggc 212


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 405
Length of database: 805
Length adjustment: 9
Effective length of query: 396
Effective length of database: 796
Effective search space:   315216
Effective search space used:   315216
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no511_c06.g1 MSMg01no511_c06.g1 CHROMAT_FILE:
MSMg01no511_c06.g1 PHD_FILE: MSMg01no511_c06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:40:55 2005
         (339 letters)



>mm_chr8_119468184_119468922
          Length = 739

 Score =  656 bits (339), Expect = 0.0
 Identities = 339/339 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   accgtgggcatcccccacccccacccctgagaactccccaactgtaacttttaggtttta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 accgtgggcatcccccacccccacccctgagaactccccaactgtaacttttaggtttta 260

                                                                       
Query: 61  ctctgtagtaaggccaataagtgtagtaaggccaacaaaaggcaacagtgatgtcaggga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctctgtagtaaggccaataagtgtagtaaggccaacaaaaggcaacagtgatgtcaggga 320

                                                                       
Query: 121 aaggtcagtcaggaaatgtcagcaggggcaagctgaggaagttctgtgtaaaggtttgag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaggtcagtcaggaaatgtcagcaggggcaagctgaggaagttctgtgtaaaggtttgag 380

                                                                       
Query: 181 cctcgttccagaacacaactcactacaggctccaacctgaagcttcctctttcatcctaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cctcgttccagaacacaactcactacaggctccaacctgaagcttcctctttcatcctaa 440

                                                                       
Query: 241 atgttaaattctctctttctctcaccatgatttaggggggtggagagtgagtgtgcctgt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atgttaaattctctctttctctcaccatgatttaggggggtggagagtgagtgtgcctgt 500

                                                  
Query: 301 aataattccatggcctaatccctcagctccttacaactt 339
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aataattccatggcctaatccctcagctccttacaactt 539


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 339
Length of database: 739
Length adjustment: 9
Effective length of query: 330
Effective length of database: 730
Effective search space:   240900
Effective search space used:   240900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)