Query= MSMg01no511_d18.b1 MSMg01no511_d18.b1 CHROMAT_FILE:
MSMg01no511_d18.b1 PHD_FILE: MSMg01no511_d18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:41:02 2005
(615 letters)
>mm_chr8_10737268_10738282
Length = 1015
Score = 766 bits (396), Expect = 0.0
Identities = 427/440 (97%), Gaps = 8/440 (1%)
Strand = Plus / Minus
Query: 176 gcagagccaagcactctctgcttcctagctgtgagcacagtgaggccagtcacctgcgcg 235
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 1015 gcagagccaagcactctctgcttcctagctgtgaacacagtgaggccagtcacctgcgcg 956
Query: 236 catgcgtatgtgcgcttccccgctgtaaagggctcaccctcaaactgtacgccaaagtag 295
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 955 catgcgtatatgcgcttccccgctgtaaagggctcaccctcaaactgtacgccaaagtag 896
Query: 296 gcctttccatccttctgctcatgtgttagttattagatcaaagcaacaggacaaatgact 355
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 895 gcctttccatccttctgctcatgtgttagttattagatcaaagcaacaggacaaatgact 836
Query: 356 gacacattgtttgaacacattgacacattgggctggagctgccgtcaagggatctgtgtg 415
||||||||||||||| | | | | ||||||||||||||||||||||||||||||||
Sbjct: 835 gacacattgtttgaa-a-a--gtc----tgggctggagctgccgtcaagggatctgtgtg 784
Query: 416 agagagtgcggtgcgggccctggatctggccttgtgatgggaacctctcactagcgcctc 475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 783 agagagtgcggtgcgggccctggatctggccttgtgatgggaacctctcactagcgcctc 724
Query: 476 agagctgcttgcctccatttaagctttcaactttctcaagaagttttccctcatgacctt 535
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 723 agagctgcttgcctccatttaagctttcaactttctcatgaagttttccctcatgacctt 664
Query: 536 tcatgtaatttctccccaccccaatccacgggcttctagggtgtctccatgggaataaat 595
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 663 tcatgtaatttctccccaccccaatccacgggcttctagggcgtctccatgggaataaat 604
Query: 596 gaacgtggtgttttaatcag 615
||||||||||||||||||||
Sbjct: 603 gaacgtggtgttttaatcag 584
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 615
Length of database: 1015
Length adjustment: 10
Effective length of query: 605
Effective length of database: 1005
Effective search space: 608025
Effective search space used: 608025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no511_d18.g1 MSMg01no511_d18.g1 CHROMAT_FILE:
MSMg01no511_d18.g1 PHD_FILE: MSMg01no511_d18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:41:02 2005
(448 letters)
>mm_chr8_10559280_10560127
Length = 848
Score = 839 bits (434), Expect = 0.0
Identities = 446/452 (98%), Gaps = 4/452 (0%)
Strand = Plus / Plus
Query: 1 tgtgaagaaagctcaatcagggacaaggctgaccatcacactatcttagtgatatcctct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgtgaagaaagctcaatcagggacaaggctgaccatcacactatcttagtgatatcctct 260
Query: 61 gtgctgtgattaaaattcccctacgcagaggaacgtaagggtttgttggggcttacggcg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtgctgtgattaaaattcccctacgcagaggaacgtaagggtttgttggggcttacggcg 320
Query: 121 actcggggatctagtctgtcttggtgaggaacatgaggccgagagtgaacaggaagtggg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 actcggggatctagtctgtcttggtgaggaacatgaggccgagagtgaacaggaagtggg 380
Query: 181 ggtggcctatgaagtctcaatgcacaaccacaatggttcacttcctccagccgtgatctg 240
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 381 ggtggcctatgaagtctcaatgcacaaccacaatggttcacttcctccagccatgatctg 440
Query: 241 cctcttgagggttcctcactctttcaaatggcaccaccagctggagagtatccaagcatc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cctcttgagggttcctcactctttcaaatggcaccaccagctggagagtatccaagcatc 500
Query: 301 tgagacagtgtgggacacttcacattggaagaggaattaggatgtgctagcaaattctta 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgagacagtgtgggacacttcacattggaagaggaattaggatgtgctagcaaattctta 560
Query: 361 ttctgggttgaatgtgttaattcttggttgtagtgcttgtgtattcatgtgtgtgtgtgt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttctgggttgaatgtgttaattcttggttgtagtgcttgtgtattcatgtgtgtgtgtgt 620
Query: 421 gtgtgtgtgtg----tgtgtgtgtgtgtgtct 448
||||||||||| ||||||||| |||||||
Sbjct: 621 gtgtgtgtgtgcgtctgtgtgtgtctgtgtct 652
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 448
Length of database: 848
Length adjustment: 10
Effective length of query: 438
Effective length of database: 838
Effective search space: 367044
Effective search space used: 367044
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
