Query= MSMg01no511_o21.b1 MSMg01no511_o21.b1 CHROMAT_FILE:
MSMg01no511_o21.b1 PHD_FILE: MSMg01no511_o21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:41:55 2005
(594 letters)
>mm_chr8_118417986_118418979
Length = 994
Score = 615 bits (318), Expect = e-180
Identities = 402/454 (88%), Gaps = 46/454 (10%)
Strand = Plus / Minus
Query: 5 gaattcacattccctgaagccaggaaaaagctgaacatggtactatttgtctataatccc 64
|||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 410 gaattcacattcccagaagccagaaaaaagctgaacatggtactatttgtctataatccc 351
Query: 65 agtgttcctgtggtgagataggcagtagagacaggagaatctaggaaaatcatgatctag 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 agtgttcctgtggtgagataggcagtagagacaggagaatctaggaaaatcatgatctag 291
Query: 125 ctagccttgtgtatgcagaactgatgggtagtatctcaaccaaggtgaattgaggatcaa 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 290 ctagccttgtgtatgcagaactgatgggtagtatctcaaccaaggtgaattgaggatcaa 231
Query: 185 cacccaacagtcagtgttggcctgttttacacacacacacacacacacacacacacacac 244
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 230 cacccaacagtcagtgttggcctg--ttacacacacacacacacacacacacacacacac 173
Query: 245 atgcacgcacacacacacacacacatacacacacacatacacacacacacatacacacac 304
|| |||||||||||||||||||||| ||||||||||||
Sbjct: 172 at--------------acacacacatacacacacacat------acacacatacac---- 137
Query: 305 acaaatacacacatacacacacacaaatacacacatacacacacataca--cacatatac 362
|||||||||||||||||| |||||||||| |||| |||||| |||| | ||
Sbjct: 136 ------acacacatacacacacac--atacacacat--acacgcatacatgcacacacac 87
Query: 363 acatacacacatacacacacacacacatacacacatacacacacacaaatacacacatac 422
|||| ||||||||||||||||||||| |||||| |||||||||| ||||||||||
Sbjct: 86 acattcacacatacacacacacacac--acacac--acacacacac----acacacatac 35
Query: 423 acacacacacacacacacacacacacacacacac 456
||||||||||||||||||||||||||||||||||
Sbjct: 34 acacacacacacacacacacacacacacacacac 1
Score = 68.4 bits (35), Expect = 1e-15
Identities = 38/39 (97%)
Strand = Plus / Minus
Query: 420 tacacacacacacacacacacacacacacacacacacac 458
|||||||||||||||||||||||||||||||||| ||||
Sbjct: 205 tacacacacacacacacacacacacacacacacatacac 167
Score = 66.5 bits (34), Expect = 6e-15
Identities = 37/38 (97%)
Strand = Plus / Minus
Query: 421 acacacacacacacacacacacacacacacacacacac 458
||||||||||||||||||||||||||||| ||||||||
Sbjct: 200 acacacacacacacacacacacacacacatacacacac 163
Score = 66.5 bits (34), Expect = 6e-15
Identities = 37/38 (97%)
Strand = Plus / Minus
Query: 421 acacacacacacacacacacacacacacacacacacac 458
||||||||||||||||||||||||||||||| ||||||
Sbjct: 202 acacacacacacacacacacacacacacacatacacac 165
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 355
Number of extensions: 53
Number of successful extensions: 53
Number of sequences better than 10.0: 1
Number of HSP's gapped: 43
Number of HSP's successfully gapped: 5
Length of query: 594
Length of database: 994
Length adjustment: 10
Effective length of query: 584
Effective length of database: 984
Effective search space: 574656
Effective search space used: 574656
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no511_o21.g1 MSMg01no511_o21.g1 CHROMAT_FILE:
MSMg01no511_o21.g1 PHD_FILE: MSMg01no511_o21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:41:55 2005
(584 letters)
>mm_chr8_118388536_118389520
Length = 985
Score = 1062 bits (549), Expect = 0.0
Identities = 576/585 (98%), Gaps = 1/585 (0%)
Strand = Plus / Plus
Query: 1 cttaaatctgtgctgaattcagagcactcacaaggtttgtaaggttcactgtagtcttct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cttaaatctgtgctgaattcagagcactcacaaggtttgtaaggttcactgtagtcttct 260
Query: 61 aaggtcaagtctggcacatcagatccactaccgaggatttgaaggagggcaaacagcaca 120
|||||||| ||||||||||||| ||||||||| |||||||| ||||||||||||||||||
Sbjct: 261 aaggtcaaatctggcacatcaggtccactaccaaggatttggaggagggcaaacagcaca 320
Query: 121 caacagatgcttgtgatagctgcatacttcccacaatgccacagtattaggcacataaac 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 321 caacagatgcttgtgatagctgcatacttcccacaatgccacagtattaggcacgtaaac 380
Query: 181 atctttcctcctgaaagagacaatcctaggctgtaaaagaaagacaggtcacattttgtg 240
| |||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||
Sbjct: 381 acctttcctcctgaaagagaaaatcgtaggctgtaaaagaaagacaggtcacattttgtg 440
Query: 241 ctatgacctaaaaaaaatatggaattgaaaaa-atttttggaagattaatattattttgc 299
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 441 ctatgacctaaaaaaaatatggaattgaaaaatatttttggaagattaatattattttgc 500
Query: 300 aagtgatggaattgaaaattaggagtatttagttgccctggtgatggagcagggctaaag 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aagtgatggaattgaaaattaggagtatttagttgccctggtgatggagcagggctaaag 560
Query: 360 tgaactagaacaaagattccaaatcattgcatgtatttggccatcactgtcactcctaca 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgaactagaacaaagattccaaatcattgcatgtatttggccatcactgtcactcctaca 620
Query: 420 gaagtgtcctctgaagtccctgagttgaaggtctgcccattatcttgggcactacttgga 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gaagtgtcctctgaagtccctgagttgaaggtctgcccattatcttgggcactacttgga 680
Query: 480 ggtgttgggaactctcccaggtagggtcttgtgggatgaactgagtcagtctgtccttga 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ggtgttgggaactctcccaggtagggtcttgtgggatgaactgagtcagtctgtccttga 740
Query: 540 agtcagtattgagcccttgacttcttcctgttctttgtttccttt 584
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 agtcagtattgagcccttgacttcttcctgttctttgtttccttt 785
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 584
Length of database: 985
Length adjustment: 10
Effective length of query: 574
Effective length of database: 975
Effective search space: 559650
Effective search space used: 559650
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
