BAC Information

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BAC

Clone NameMSMg01-512D04
Chromosome8 (Build37)
Map Location 25,166,230 - 25,166,602
singlet/doubletsinglet
Overlap geneZmat4
Upstream geneAnk1, Nkx6-3, Agpat6, Gins4, Golga7, Sfrp1, LOC100040931
Downstream gene1810011O10Rik, Indol1, Indo, Adam18, Adam3, Adam5, Adam32, Adam9, Tm2d2, Htra4, Plekha2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-512D04.T7 (MSMg01no512_d04.b1)MSMg01-512D04.TJ (MSMg01no512_d04.g1)
ACCAG585214AG585215
length750680
length of high quality
(start - end)		554 (43 - 596)51 (72 - 122)
definitionCHROMAT_FILE: MSMg01no512_d04.b1 PHD_FILE: MSMg01no512_d04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:42:16 2005CHROMAT_FILE: MSMg01no512_d04.g1 PHD_FILE: MSMg01no512_d04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:42:16 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCATTACATTGTTTCTATTTATGTGGAGAGCTGGGGCTCTAGTTTGCTAT
CTATTGCTATGATAAACACCATGATGAAAAGCAAAGGGTTTATTTAATCA
TATACATCATAATCCATCATCAAGGGAAGCTACAGCAGGAGCCTGGAGCA
GACACTGAAGTAGTAACTATGGAGGACTGGCTGTTGACTGCCTTGCTTCT
AGGATCACAGTAAGCTACCTTTCTTACACAGCCTAGGCCTGCCTGCTTGG
GGATGGCACTGCCCACAGGATCTGATCCTCCTCGATCAATGACTAACCAA
GAAAATTCATTACAGACATGATCACAGGCCAGGCCAACTGAGGCAGTTCT
TCAACTGAAGATCTCTTTTCCCAAGCTGTGTTAGCCAATCAGGTTAGCCA
CCAAGATTGGTCATCACAGTAGTCTCATGGTCTGTCTGCCATTAGGTCAA
ATTGGGAGAGAGAACTCAGTCTCGTGCTGCATATGTCAATCACACAGCTC
ACTTTCCTTACTCTGAATGCATATAATAAACAGGATAAGCGTACGACCCC
TTTTCACCTATGCTACCTTTAGCAGAACACTAGACATTAAGGAATGCTCT
CCTTGTGATCTTGTGGAACACCATTATGAGGAAATGGGATCTTTCACAAG
GGTGCTCTTGTGCATCTTTCTAAAGAATCTTCCCGGTAGAGAACCACGAG


TATTCTTTGTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXACTTGGTACTTATGTGATAATTACTCAGT
GTGGTTGGTGGCTACCATGTTTGCGTGGTCATGGATTCACAAAGGGATTC
CCCCAGTTCCCCCAGGGATCCAGTGAAAATGCAGCTATACAGATTGATCT
AACCTTTACACCGGTTTGAATAAGAAAACGCATCCTTACCTTGGTTTGAA
AGTTTTACCCTGGTGAAAAACCCATTTTAAGTAATAATTTTTTTTGCCCC
TCTGTGCTTAAAGGGAAAATTTCCCTAAAACTTTGGGTTTTAGCAAAAAA
CCCTTTTTAAATTACCCCGGGCAATTCTTTTTTTTAAACCCTTCTTTTTT
GGGAAAATTTTTAAAAAGGGCCCCCCCTCTCTTAAAATTTTTATAAATAG
ACCAGCCATAAAAAGGGGCGGGGGGGCTGGGTTAAATTTTAAAAATAAAA
TTTTTTCTCCTCAAATATCCTTTATTTCACCCTTTTACCTTTTTTTCCAT
ATAAAAAAGGGGGGGCCATTATAACAAAACTTTTTTTTTCTCTTTTTTTC
TCTACCCACACTGTTTATTATACCCCTCTTCTCTTTCTATCTTTTCCTCC
CTACCCTCCTTTTATTTTTCTTTTTTTCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no512_d04.b1 MSMg01no512_d04.b1 CHROMAT_FILE:
MSMg01no512_d04.b1 PHD_FILE: MSMg01no512_d04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:42:16 2005
         (554 letters)



>mm_chr8_25165649_25166602
          Length = 954

 Score =  654 bits (338), Expect = 0.0
 Identities = 365/374 (97%), Gaps = 1/374 (0%)
 Strand = Plus / Minus

                                                                       
Query: 181 aggactggctgttgactgccttgcttctaggatcacagtaagctacctttcttacacagc 240
           ||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||
Sbjct: 954 aggactggctgttgactaccttgcttctaggatctcagtaagctacctttcttacacagc 895

                                                                       
Query: 241 ctaggcctgcctgcttggggatggcactgcccacaggatctgatcctcctcgatcaatga 300
           ||||||||  |||||| ||||||| ||||||||||||||||| |||||||||||||||||
Sbjct: 894 ctaggcctatctgcttagggatggtactgcccacaggatctggtcctcctcgatcaatga 835

                                                                       
Query: 301 ctaaccaagaaaattcattacagacatgatcacaggccaggccaactgaggcagttcttc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 834 ctaaccaagaaaattcattacagacatgatcacaggccaggccaactgaggcagttcttc 775

                                                                       
Query: 361 aactgaagatctcttttcccaagctgtgttagccaatcaggttagccaccaagattggtc 420
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 774 aactgaagatctcttttccc-agctgtgttagccaatcaggttagccaccaagattggtc 716

                                                                       
Query: 421 atcacagtagtctcatggtctgtctgccattaggtcaaattgggagagagaactcagtct 480
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 715 atcacagtagtctcatggtctgtctgccattaggtcaaattggaagagagaactcagtct 656

                                                                       
Query: 481 cgtgctgcatatgtcaatcacacagctcactttccttactctgaatgcatataataaaca 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 655 cgtgctgcatatgtcaatcacacagctcactttccttactctgaatgcatataataaaca 596

                         
Query: 541 ggataagcgtacga 554
           ||||||||||||||
Sbjct: 595 ggataagcgtacga 582


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 554
Length of database: 954
Length adjustment: 10
Effective length of query: 544
Effective length of database: 944
Effective search space:   513536
Effective search space used:   513536
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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